MOTIVATION: Genome plotting is performed using a wide range of visualizations 
tools each with emphasis on a different informative dimension of the genome. 
These tools can provide a deeper insight into the genomic structure of the 
organism.
RESULTS: Here, we announce a new visualization tool that is specifically 
designed for chloroplast genomes. It allows the users to depict the genetic 
architecture of up to ten chloroplast genomes in the vicinity of the sites 
connecting the inverted repeats to the short and long single copy regions. The 
software and its dependent libraries are fully coded in R and the reflected plot 
is scaled up to realistic size of nucleotide base pairs in the vicinity of the 
junction sites. We introduce a website for easier use of the program and R 
source code of the software to be used in case of preferences to be changed and 
integrated into personal pipelines. The input of the program is an annotation 
GenBank (.gb) file, the accession or GI number of the sequence or a DOGMA output 
file. The software was tested using over a 100 embryophyte chloroplast genomes 
and in all cases a reliable output was obtained.
AVAILABILITY AND IMPLEMENTATION: Source codes and the online suit available at 
https://irscope.shinyapps.io/irapp/ or https://github.com/Limpfrog/irscope.