SUMMARY: JUCHMME is an open-source software package designed to fit arbitrary 
custom Hidden Markov Models (HMMs) with a discrete alphabet of symbols. We 
incorporate a large collection of standard algorithms for HMMs as well as a 
number of extensions and evaluate the software on various biological problems. 
Importantly, the JUCHMME toolkit includes several additional features that allow 
for easy building and evaluation of custom HMMs, which could be a useful 
resource for the research community.
AVAILABILITY AND IMPLEMENTATION: http://www.compgen.org/tools/juchmme, 
https://github.com/pbagos/juchmme.
SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics 
online.