lsr:sep
type: Ontology
format version [obo_vocabulary:format-version]: 1.0
date [obo_vocabulary:date]: 07:07:2008 12:36
saved by [obo_vocabulary:saved-by]: Frank
auto generated by [obo_vocabulary:auto-generated-by]: OBO-Edit 1.101
default namespace [obo_vocabulary:default-namespace]: default_namespace

format version [obo_vocabulary:format-version]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: format-version
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: format version
type: DatatypeProperty

Bio2RDF namespace
type: DatatypeProperty

Bio2RDF identifier
type: DatatypeProperty

Bio2RDF uri
type: DatatypeProperty

identifiers.org URI
type: ObjectProperty

Provider URI
type: ObjectProperty

date [obo_vocabulary:date]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: date
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: date
type: DatatypeProperty

saved by [obo_vocabulary:saved-by]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: saved-by
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: saved by
type: DatatypeProperty

auto generated by [obo_vocabulary:auto-generated-by]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: auto-generated-by
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: auto generated by
type: DatatypeProperty

default namespace [obo_vocabulary:default-namespace]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: default-namespace
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: default namespace
type: DatatypeProperty

entity [sep:00001]
Bio2RDF namespace: sep
Bio2RDF identifier: 00001
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: entity
type: Class
description: This is the root node of the ontology to provide controlled vocabulary terms protein separation based experiments. [PSI:GEL The PSI Working group for gels]
subclass of: obo vocabulary:Entity

obo vocabulary:Entity
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: Entity
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

abstract [sep:00002]
Bio2RDF namespace: sep
Bio2RDF identifier: 00002
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: abstract
type: Class
description: Properties or qualities as distinguished from any particular embodiment of the properties/qualities in a physical medium. Instances of Abstract can be said to exist in the same sense as mathematical objects such as sets and relations, but they cannot exist at a particular place and time without some physical encoding or embodiment. [SUMO:abstract Suggested Upper Merged Ontology]
subclass of: entity [sep:00001]

physical [sep:00003]
Bio2RDF namespace: sep
Bio2RDF identifier: 00003
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: physical
type: Class
description: An entity that has a location in space-time. Note that locations are themselves understood to have a location in space-time. [SUMO:physical Suggested Upper Merged Ontology]
subclass of: entity [sep:00001]

attribute [sep:00004]
Bio2RDF namespace: sep
Bio2RDF identifier: 00004
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: attribute
type: Class
description: An attribute is an abstraction which belongs to or is a characteristic of an entity. [WordNet:attribute http://wordnet.princeton.edu/]
subclass of: abstract [sep:00002]

quality [sep:00005]
Bio2RDF namespace: sep
Bio2RDF identifier: 00005
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: quality
type: Class
description: An abstract concept that is exhibited in full if it is possessed by an object at all (a categorical property), that inheres in a bearer by virtue of how the bearer is related to other entities. Examples: the color of a tomato, the ambient temperature of air, the circumference of a waist, the shape of a nose, the mass of a piece of gold, the weight of a chimpanzee. [PATO:http://purl.org/obo/owl/PATO Phenotypic quality ontology]
comment [obo_vocabulary:comment]: Quality should be used to describe abstract qualities of entitiys such as color, shape and state. PATO (http://obo.sourceforge.net/cgi-bin/detail.cgi?quality) should be consulted and imported under this node before creating sepCV specific terms.
subclass of: abstract [sep:00002]

comment [obo_vocabulary:comment]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: comment
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: comment
type: DatatypeProperty

identifier [sep:00006]
Bio2RDF namespace: sep
Bio2RDF identifier: 00006
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: identifier
type: Class
description: An identifier is an attribute which characterises the identification of an entity. [PSI:GEL The PSI Workging Group for gel based experiments]
subclass of: attribute [sep:00004]

format [sep:00007]
Bio2RDF namespace: sep
Bio2RDF identifier: 00007
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: format
type: Class
description: A format is a quality that is a specificiation or arrangement of a specified form. The structure, layout, or the digital manifestation of an entity. [PSI:GEL The PSI working groups for gel based experiments]
subclass of: quality [sep:00005]

parameter [sep:00008]
Bio2RDF namespace: sep
Bio2RDF identifier: 00008
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: parameter
type: Class
description: A parameter is an attribute that defines a system and determines (or limits) its performance. [Wordnet:parameter Wordnet]
subclass of: attribute [sep:00004]

distribution [sep:00009]
Bio2RDF namespace: sep
Bio2RDF identifier: 00009
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: distribution
type: Class
description: A distribution is a quality that specifies an arrangement of values of a variable showing their observed or theoretical frequency of occurrence. [WordNet:statistical distribution WordNet 1.7.1]
subclass of: quality [sep:00005]

role [sep:00010]
Bio2RDF namespace: sep
Bio2RDF identifier: 00010
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: role
type: Class
description: A role is an attribute that is the activity assigned to or required or expected of an entiy within the context of a particular process. [PSI:GEL The PSI Working Group for Gel based experiments]
subclass of: attribute [sep:00004]

digital data set [sep:00011]
Bio2RDF namespace: sep
Bio2RDF identifier: 00011
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: digital data set
type: Class
description: A digital data set is is a digital entity that is a collection of the same or heterogenous digital entities. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: digital entity [sep:00109]

digital entity [sep:00109]
Bio2RDF namespace: sep
Bio2RDF identifier: 00109
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: digital entity
type: Class
description: A digital entity is an abstract concept that is a binary representation of information; facts, concepts, or instructions in a formalized manner suitable for communication, interpretation, or processing by humans or by automatic means. Any representations such as characters or analog quantities to which meaning is or might be assigned. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: abstract [sep:00002]

product attribute [sep:00012]
Bio2RDF namespace: sep
Bio2RDF identifier: 00012
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: product attribute
type: Class
description: A product attribute is an attribute that is assigned to a physical object which has been produced by human or mechanical effort or by a natural process. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: attribute [sep:00004]

proteomics standards initiative working group [sep:00013]
Bio2RDF namespace: sep
Bio2RDF identifier: 00013
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: proteomics standards initiative working group
type: Class
description: The proteomics standards intiative working group name is an identifier for the Proteomics Standards Initiative (PSI) working groups. The primary functions of creating, editing, maintaining and obsoleting recommendations are the task of a Working Group. [PSI:Gel The PSI Working group for gel based experiments for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: PSI WG []
subclass of: organization [sep:00078]

exact_synonym [obo_vocabulary:exact_synonym]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: exact_synonym
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: exact_synonym
type: DatatypeProperty

organization [sep:00078]
Bio2RDF namespace: sep
Bio2RDF identifier: 00078
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: organization
type: Class
description: An organization is a group which the members of an Organization typically have a common purpose or function. Note that this class also covers divisions, departments, etc. of organizations. For example, both the Shell Corporation and the accounting department at Shell would both be instances of Organization. Note too that the existence of an Organization is dependent on the existence of at least one member (since Organization is a subclass of Collection). Accordingly, in cases of purely legal organizations, a fictitious member should be assumed. [SUMO:organisation The PSI working group for gel based experiments]
subclass of: group [sep:00077]

Uniform Resource Identifier [sep:00014]
Bio2RDF namespace: sep
Bio2RDF identifier: 00014
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Uniform Resource Identifier
type: Class
description: A Uniform Resource Identifier (URI) is an identifier which is a compact sequence of characters that identifies an abstract or physical resource. This specification defines the generic URI syntax and a process for resolving URI references that might be in relative form, along with guidelines and security considerations for the use of URIs on the Internet. The URI syntax defines a grammar that is a superset of all valid URIs, allowing an implementation to parse the common components of a URI reference without knowing the scheme-specific requirements of every possible identifier. This specification does not define a generative grammar for URIs; that task is performed by the individual specifications of each URI scheme. http://tools.ietf.org/html/rfc3986. [IETF:rfc3986 The Internet Engineering Task Force http://tools.ietf.org/html/rfc3986]
exact_synonym [obo_vocabulary:exact_synonym]: URI []
subclass of: identifier [sep:00006]

batch identifier [sep:00015]
Bio2RDF namespace: sep
Bio2RDF identifier: 00015
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: batch identifier
type: Class
description: A batch identifier is a product attribute which is a token which identifies the batch or lot number of a product. [PSI:GEL The PSI Workign group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: batch number []
exact_synonym [obo_vocabulary:exact_synonym]: lot number []
subclass of: product attribute [sep:00012]

catalogue identifier [sep:00016]
Bio2RDF namespace: sep
Bio2RDF identifier: 00016
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: catalogue identifier
type: Class
description: A catalogue identifier is a product attribute which is designated by a manufacture, seller, or producer of a product. [PSI:Gel The PSI working group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: catalogue number []
subclass of: product attribute [sep:00012]

model identifier [sep:00017]
Bio2RDF namespace: sep
Bio2RDF identifier: 00017
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: model identifier
type: Class
description: A model identifier is a product attribute assigned to a product. [PSI:Gel The PSI working group for gel based experiments]
related_synonym [obo_vocabulary:related_synonym]: model number []
subclass of: product attribute [sep:00012]

related_synonym [obo_vocabulary:related_synonym]
Bio2RDF namespace: obo_vocabulary
Bio2RDF identifier: related_synonym
type: obo_vocabulary resource [obo_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: related_synonym
type: DatatypeProperty

linear distribution [sep:00018]
Bio2RDF namespace: sep
Bio2RDF identifier: 00018
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: linear distribution
type: Class
description: A linear distribution is a statsitical distribution that is equally sequential. [PSI:Gel The PSI working group for gel based experiments]
subclass of: distribution [sep:00009]

logarithmic distribution [sep:00019]
Bio2RDF namespace: sep
Bio2RDF identifier: 00019
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: logarithmic distribution
type: Class
description: A logarithmic distribution is a statistical distribution which is a scale in which the distances that numbers are at from a reference point are proportional to their logarithms. [McGraw-Hill Dictionary of Scientific and Technical Terms:logarithmic McGraw-Hill Companies Inc. 2003. Answers.com 14 Nov. 2006. http://www.answers.com/topic/logarithmic-scale-2]
subclass of: distribution [sep:00009]

maximum parameter [sep:00020]
Bio2RDF namespace: sep
Bio2RDF identifier: 00020
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: maximum parameter
type: Class
description: A maximum parameter is a parameter which has he largest possible value for a parameter. [PSI:Gel The PSi Working group for gel based experiments]
subclass of: parameter [sep:00008]

minimum parameter [sep:00021]
Bio2RDF namespace: sep
Bio2RDF identifier: 00021
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: minimum parameter
type: Class
description: A minimum parameter is a parameter which has the smallest possible value for a parameter. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: parameter [sep:00008]

state [sep:00022]
Bio2RDF namespace: sep
Bio2RDF identifier: 00022
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: state
type: Class
description: A state is a quality that is the manner of being or form of existence. [:The American Heritage Dictionary of the English Language, Fourth Edition:state Houghton Mifflin Company 2004. Answers.com 14 Nov. 2006. http://www.answers.com/topic/state]
subclass of: quality [sep:00005]

electrical mode [sep:00023]
Bio2RDF namespace: sep
Bio2RDF identifier: 00023
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: electrical mode
type: Class
description: Electric mode is a mode that represents one of several alternative conditions of a measure of electric from a device. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: mode [sep:00026]

mode [sep:00026]
Bio2RDF namespace: sep
Bio2RDF identifier: 00026
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: mode
type: Class
description: A mode is a state that is one of several alternative conditions or methods of operation of a device. [McGraw-Hill Dictionary of Scientific and Technical Terms:mode McGraw-Hill Companies Inc. 2003. Answers.com 14 Nov. 2006. http://www.answers.com/topic/mode-14]
subclass of: state [sep:00022]

gradient mode [sep:00024]
Bio2RDF namespace: sep
Bio2RDF identifier: 00024
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gradient mode
type: Class
description: A gradient mode is an electic mode that is a graded process of increases or decreases for a given period in time in the context of use within a process. [PSI:Gel The PSI working group for gel based experiments]
related_synonym [obo_vocabulary:related_synonym]: ramp []
subclass of: electrical mode [sep:00023]

social role [sep:00025]
Bio2RDF namespace: sep
Bio2RDF identifier: 00025
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: social role
type: Class
description: A social role is a role that specify the position or status of a entity within an Organization or other Group. [SUMO:social role Suggested Upper Merged Ontology]
subclass of: role [sep:00010]

hold mode [sep:00027]
Bio2RDF namespace: sep
Bio2RDF identifier: 00027
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: hold mode
type: Class
description: A hold mode is an electric mode where the measure of electric remains constant for a given period in time in the context of use within a process. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: electrical mode [sep:00023]

step and hold mode [sep:00028]
Bio2RDF namespace: sep
Bio2RDF identifier: 00028
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: step and hold mode
type: Class
description: a step and hold mode is an electrical mode which the measure of electric is increased (or decreased) in a defined series of increases (or decreases) from a low electric measure value to a high electric measure value and then remains constant (is held) for a given period in time in the context of use within a process. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: electrical mode [sep:00023]

substance role [sep:00029]
Bio2RDF namespace: sep
Bio2RDF identifier: 00029
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: substance role
type: Class
description: A susbtance role is a role that the function or part assigned to or required or expected of a substance within the context of a particular process. [SUMO:role Suggested Upper Merged Ontology]
subclass of: role [sep:00010]

position [sep:00030]
Bio2RDF namespace: sep
Bio2RDF identifier: 00030
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: position
type: Class
description: A position is a social role that is a formal declaration of reponsibility within an Organization. Examples of Positions include president, laboratory director, senior researcher, sales representative, etc. [SUMO:position Suggested Upper Merged Ontology]
subclass of: social role [sep:00025]

lecturer [sep:00031]
Bio2RDF namespace: sep
Bio2RDF identifier: 00031
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: lecturer
type: Class
description: Lecturer is a position. [PSI:Gel The PSI Working group for gel based experiments for gel based experiments]
subclass of: position [sep:00030]

professor [sep:00032]
Bio2RDF namespace: sep
Bio2RDF identifier: 00032
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: professor
type: Class
description: Professor is a postion. [PSI:Gel The PSI working group for gel based experiments]
subclass of: position [sep:00030]

reader [sep:00033]
Bio2RDF namespace: sep
Bio2RDF identifier: 00033
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: reader
type: Class
description: Reader is a position. [PSI :Gel The PSI Working group for gel based experiments]
subclass of: position [sep:00030]

researcher [sep:00034]
Bio2RDF namespace: sep
Bio2RDF identifier: 00034
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: researcher
type: Class
description: A researcher is a position. [PSI:Gel The PSI working group for gel based experiments]
subclass of: position [sep:00030]

principle investigator [sep:00035]
Bio2RDF namespace: sep
Bio2RDF identifier: 00035
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: principle investigator
type: Class
description: A principle investigator is a position. [PSI:GEL The PSI working group for gel based experiments]
subclass of: position [sep:00030]

cross linker [sep:00036]
Bio2RDF namespace: sep
Bio2RDF identifier: 00036
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: cross linker
type: Class
description: A cross linker is a substance role that induces covalent bonds linking one polymer chain to another They are the characteristic property of thermosetting plastics materials. In biology, cross-linking has applications in forming polyacrylamide gels for gel electrophoresis. [Wikkipedia:cross linker http://en.wikipedia.org/wiki/Cross-linker]
subclass of: substance role [sep:00029]

medium [sep:00037]
Bio2RDF namespace: sep
Bio2RDF identifier: 00037
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: medium
type: Class
description: A medium is a substance role which an intervening substance through which something else is transmitted or carried on. [:The American Heritage Dictionary of the English Language, Fourth Edition:medium Houghton Mifflin Company 2004. Answers.com 14 Nov. 2006. http://www.answers.com/topic/medium]
subclass of: substance role [sep:00029]

detection medium [sep:00038]
Bio2RDF namespace: sep
Bio2RDF identifier: 00038
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: detection medium
type: Class
description: A detection medium is a medium role of function of a substance to act as a medium which faciliates the detection of an entity. MAIPE.GE: If the proteins on the gel matrix must be exposed to another medium to permit detection (e.g. photographic film for radiolabel samples) then give details of name, model, manufacture, of detection medium.If the proteins on the gel matrix must be exposed to another medium to permit detection (e.g. photographic film for radiolabel samples) then give details of name, model, manufacture, of detection medium. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: medium [sep:00037]

separation medium [sep:00039]
Bio2RDF namespace: sep
Bio2RDF identifier: 00039
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: separation medium
type: Class
description: A separation medium is a medium role of a substance that is used to separate a substance in the context of use within a protocol. In gel electrophoresis the gel is the separation medium. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: medium [sep:00037]

transfer medium [sep:00040]
Bio2RDF namespace: sep
Bio2RDF identifier: 00040
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: transfer medium
type: Class
description: A transfer medium is a medium role in which a substance facilitates the transfer of a substance to another substance in the context of a process MIAPE.GE: If the proteins separated along the gel, are transferred to another medium to aid detection (such as a nitrocellulose membrane as used in immunoblots) then give details of the name and type of medium, models and manufacturers, where appropriate. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: medium [sep:00037]

gelling agent [sep:00041]
Bio2RDF namespace: sep
Bio2RDF identifier: 00041
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gelling agent
type: Class
description: A gelling agent is a substance role of a substance to react with another substance to form a gel. [PSI:Gel The PSI working groupfor gel based experiments]
subclass of: substance role [sep:00029]

sample [sep:00042]
Bio2RDF namespace: sep
Bio2RDF identifier: 00042
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: sample
type: Class
description: A sample is a substance role played by a biological substance as an input substance to a protocol. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: substance role [sep:00029]

permission [sep:00043]
Bio2RDF namespace: sep
Bio2RDF identifier: 00043
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: permission
type: Class
description: A permission is an attribute which is a formal authorization. [Wordnet:permission WordNet 1.7.1.]
subclass of: attribute [sep:00004]

security access [sep:00044]
Bio2RDF namespace: sep
Bio2RDF identifier: 00044
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: security access
type: Class
description: Security access is an permission attribute which is specification of the access right (e.g read or write) that is specified on a particular object. [FUGE:security access Functional genomics experiment]
subclass of: permission [sep:00043]

read access [sep:00045]
Bio2RDF namespace: sep
Bio2RDF identifier: 00045
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: read access
type: Class
description: Read access is a security access permission attribute which is the access right to obtain (data) from a storage medium, such as a magnetic disk. [PSI :Gel The PSI Working Group of gel based experiments]
subclass of: security access [sep:00044]

write access [sep:00046]
Bio2RDF namespace: sep
Bio2RDF identifier: 00046
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: write access
type: Class
description: Write access is a security access permission attribute that is the access right to record or update stored data. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: security access [sep:00044]

data format [sep:00047]
Bio2RDF namespace: sep
Bio2RDF identifier: 00047
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: data format
type: Class
description: A data format is a format of data Each has its own headers, codes and rules for laying out the content. There are many different file structures for each kind of file, including executable programs, word processing documents, graphics files and databases. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: format [sep:00007]

image file format [sep:00048]
Bio2RDF namespace: sep
Bio2RDF identifier: 00048
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: image file format
type: Class
description: An image file format is a data format that provides a standardized method of organizing and storing image data. Image files are made up of picture elements, called pixels. The pixels that comprise an image are in the form of a grid of columns and rows. Each of the pixels in an image stores digital numbers representing brightness and color. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: data format [sep:00047]

graphics interchange format [sep:00049]
Bio2RDF namespace: sep
Bio2RDF identifier: 00049
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: graphics interchange format
type: Class
description: A graphics interchange format is an image file format that supports animated images. Supports only 255 colors per frame, so requires lossy quantization for full-color photos (dithering); using multiple frames can improve color precision. [Wikipedia:graphics interchange format http://en.wikipedia.org/wiki/Graphics_file_format]
exact_synonym [obo_vocabulary:exact_synonym]: gif []
subclass of: image file format [sep:00048]

Joint Photographic Experts Group [sep:00050]
Bio2RDF namespace: sep
Bio2RDF identifier: 00050
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Joint Photographic Experts Group
type: Class
description: A Joint Photographic Experts Group is an image file format which is used extensively for photos and other continuous tone images on the web. Uses lossy compression by trying to equalize eight by eight pixel blocks; the quality can vary greatly depending on the compression settings. [WIkipedia:Joint Photography Experts Group http://en.wikipedia.org/wiki/Graphics_file_format]
exact_synonym [obo_vocabulary:exact_synonym]: jpeg []
exact_synonym [obo_vocabulary:exact_synonym]: jpg []
subclass of: image file format [sep:00048]

Portable Network Graphics [sep:00051]
Bio2RDF namespace: sep
Bio2RDF identifier: 00051
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Portable Network Graphics
type: Class
description: A Portable Network Graphics is an image file format which lossless compression, offering bit depths from 1 to 48. [Wikipedia:Portable Network Graphics http://en.wikipedia.org/wiki/Graphics_file_format]
exact_synonym [obo_vocabulary:exact_synonym]: png []
subclass of: image file format [sep:00048]

Scalable Vector Graphics [sep:00052]
Bio2RDF namespace: sep
Bio2RDF identifier: 00052
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Scalable Vector Graphics
type: Class
description: Scalable Vector Graphics is an image file format which is an XML based vector graphics format, as defined by the World Wide Web Consortium for use in web browsers. [Wikipedia:Scalable Vector Graphics http://en.wikipedia.org/wiki/Graphics_file_format]
exact_synonym [obo_vocabulary:exact_synonym]: svg []
subclass of: image file format [sep:00048]

Tagged Image File Format [sep:00053]
Bio2RDF namespace: sep
Bio2RDF identifier: 00053
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Tagged Image File Format
type: Class
description: A Tagged Image File Format is an image file format which is used extensively for traditional print graphics. Lossy and lossless compression available, but many programs only support a subset of available options. [Wikipedia:Tagged Image File Format http://en.wikipedia.org/wiki/Graphics_file_format]
exact_synonym [obo_vocabulary:exact_synonym]: tif []
exact_synonym [obo_vocabulary:exact_synonym]: tiff []
subclass of: image file format [sep:00048]

Windows Bitmap [sep:00054]
Bio2RDF namespace: sep
Bio2RDF identifier: 00054
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Windows Bitmap
type: Class
description: A Windows Bitmap is a image file format which is commonly used by Microsoft Windows programs, and the Windows operating system itself. Lossless compression can be specified, but some programs use only uncompressed files. [Wikipedia:Windows Bitmap http://en.wikipedia.org/wiki/Graphics_file_format]
exact_synonym [obo_vocabulary:exact_synonym]: bmp []
subclass of: image file format [sep:00048]

quantity [sep:00055]
Bio2RDF namespace: sep
Bio2RDF identifier: 00055
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: quantity
type: Class
description: A quantity is an abstract concept which is any specification of how many or how much of something there is. [SUMO:quality Suggested Upper Merged Ontology]
subclass of: abstract [sep:00002]

unit of measure [sep:00056]
Bio2RDF namespace: sep
Bio2RDF identifier: 00056
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: unit of measure
type: Class
description: A unit of measure is a quantity which is a standard of measurement for some dimension. For example, the Meter is a Unit O fMeasure for the dimension of length, as is the Inch. There is no intrinsic property of a UnitOfMeasure that makes it primitive or fundamental; rather, a system of units (e.g. Systeme International Unit) defines a set of orthogonal dimensions and assigns units for each. [SUMO:unit of measure Suggested Upper Merged Ontology]
comment [obo_vocabulary:comment]: Units of measure should be imported from PATO units ontology under this node http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/.
subclass of: quantity [sep:00055]

measurement range [sep:00057]
Bio2RDF namespace: sep
Bio2RDF identifier: 00057
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: measurement range
type: Class
description: A measurement range is a quantity which consists of a lower value, an upper value and a unit of measure. [PSI:Gel The PSI Working Group for gel based experiments]
subclass of: quantity [sep:00055]

pH range [sep:00058]
Bio2RDF namespace: sep
Bio2RDF identifier: 00058
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: pH range
type: Class
description: A pH range is a measurement range which has a unit of measure of pH. [PSI:Gel The PSI Working Group for gel based experiments]
subclass of: measurement range [sep:00057]

molecular weight range [sep:00059]
Bio2RDF namespace: sep
Bio2RDF identifier: 00059
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: molecular weight range
type: Class
description: A molecular weight range is a measurement range which has a measurement unit of Kilo Daltons. [PSI:Gel The PSI Working group for gel based experiments]
subclass of: measurement range [sep:00057]

software [sep:00060]
Bio2RDF namespace: sep
Bio2RDF identifier: 00060
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: software
type: Class
description: Software is a digital entity that is the general term for a variety of procedures and routines that harness the computational power of a computer to produce, for example, a general operating system that coordinates the basic workings of the computer or specific applications. A common misconception is that software is data. It is not. Software tells the hardware how to process the data. [West's Encyclopedia of American Law:software The Gale Group Inc 1998. Answers.com 15 Nov. 2006. http://www.answers.com/topic/computer-software.]
subclass of: digital entity [sep:00109]

image acquistion software [sep:00061]
Bio2RDF namespace: sep
Bio2RDF identifier: 00061
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: image acquistion software
type: Class
description: Image acquisition software is software that is designed to aquire a digitised image of a physical object. [PSI:GEL The PSI working group for gel based Experiments.]
subclass of: software [sep:00060]

image analysis software [sep:00062]
Bio2RDF namespace: sep
Bio2RDF identifier: 00062
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: image analysis software
type: Class
description: Image analysis software is software which is the extraction of meaningful information from images; mainly from digital images by means of digital image processing techniques. Image analysis tasks can be as simple as reading bar coded tags or as sophisticated as identifying a person from their face. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: software [sep:00060]

progenisis [sep:00063]
Bio2RDF namespace: sep
Bio2RDF identifier: 00063
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: progenisis
type: Class
description: The progenesis range is image analysis software manufactured by Nonlinear Dynamics that offers analysis and data-mining software for 2D electrophoresis and MS applications, including biomarker discovery. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: image analysis software [sep:00062]

software attribute [sep:00064]
Bio2RDF namespace: sep
Bio2RDF identifier: 00064
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: software attribute
type: Class
description: A software attribute is an attribute that is associated with software. [PSI:GEL The PSI Working Group for gel based experiments]
subclass of: attribute [sep:00004]

software version number [sep:00065]
Bio2RDF namespace: sep
Bio2RDF identifier: 00065
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: software version number
type: Class
description: A software version number is a software attribute that represents the version of software. [PSI:GEL The PSI Working Group for gel based experiments]
subclass of: software attribute [sep:00064]

progenisis PG200 [sep:00066]
Bio2RDF namespace: sep
Bio2RDF identifier: 00066
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: progenisis PG200
type: Class
description: Progenisis PG200 is a progenisis image analysis software that offers an advanced workflow and powerful data analysis for the proteomics researcher. [PSI:GEL The PSI working Group fro gel based experiments]
subclass of: progenisis [sep:00063]

progeniss PG220 [sep:00067]
Bio2RDF namespace: sep
Bio2RDF identifier: 00067
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: progeniss PG220
type: Class
description: Progenisis PG220 is a progensis image analysis software that has all the features of the PG200 plus a range of additional tools designed specifically for the analysis of DIGE experiments. [PSI:GEL The PSI Working Group for gel based experiments]
subclass of: progenisis [sep:00063]

progenisis PG240 [sep:00068]
Bio2RDF namespace: sep
Bio2RDF identifier: 00068
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: progenisis PG240
type: Class
description: The Progenisis PG240 is a progensis image analysis software that is the flagship of traditional and 2D DIGE gel analysis products, the PG240 caters for the needs of the most advanced users. [PSI:GEL The PSI Working Group for gel based experiments]
subclass of: progenisis [sep:00063]

SameSpots [sep:00069]
Bio2RDF namespace: sep
Bio2RDF identifier: 00069
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: SameSpots
type: Class
description: SameSpots is image analysis software by Nonlinear Dynamice that is unique technology delivering a major advance for the analysis of single stain or 2D DIGE images, allowing you to match and compare all the proteins in your experiment. SameSpots redefines the 2D image analysis workflow, delivering significant improvements in speed, objectivity and statistical power that create new possibilities for proteomics research. [PSI:GEL The PSI working group for gel based experiments]
subclass of: image analysis software [sep:00062]

DeCyder [sep:00070]
Bio2RDF namespace: sep
Bio2RDF identifier: 00070
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: DeCyder
type: Class
description: Decyder is image analysis software that significantly increases throughput by accurately addressing measurement of protein differences with statistical confidence . DeCyder Differential Analysis Software automatically detects, matches and analyzes protein spots in multiplexed fluorescent images, and is able to give routine detection of < 10% differences with > 95 % confidence. Statistical analysis is carried out on each and every difference. [PSI:GEL The PSI working group for gel based experiments]
subclass of: image analysis software [sep:00062]

Delta2D [sep:00071]
Bio2RDF namespace: sep
Bio2RDF identifier: 00071
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Delta2D
type: Class
description: Delata2D is image analysis software that is manufactured by Decodon. [PSI:GEL The PSI working group for gel based experiments]
subclass of: image analysis software [sep:00062]

object [sep:00072]
Bio2RDF namespace: sep
Bio2RDF identifier: 00072
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: object
type: Class
description: An object is a physical concept that has independent material existence and is a separate and distinct portion of matter. [Roget's II: The New Thesaurus, Third Edition:object Houghton Mifflin Company 1995. Answers.com 15 Nov. 2006. http://www.answers.com/topic/object.]
subclass of: physical [sep:00003]

process [sep:00073]
Bio2RDF namespace: sep
Bio2RDF identifier: 00073
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: process
type: Class
description: A process is a physical concpet that has temporal parts or stages. Examples include extended events like a football match or a race, actions like Pursuing and Reading, and biological processes. The formal definition is: anything that lasts for a time but is not an Object. Note that a Process may have participants 'inside' it which are Objects, such as the players in a football match. In a 4D ontology, a Process is something whose spatiotemporal extent is thought of as dividing into temporal stages roughly perpendicular to the time-axis. [SUMO:process Suggested Upper Merged Ontology]
subclass of: physical [sep:00003]

collection [sep:00074]
Bio2RDF namespace: sep
Bio2RDF identifier: 00074
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: collection
type: Class
description: A collection is an object which have members and a position in space-time and members can be added and subtracted without thereby changing the identity of the Collection. Some examples are toolkits, football teams, and flocks of sheep. [SUMO:collection Suggested Upper Merged Ontology]
subclass of: object [sep:00072]

device [sep:00075]
Bio2RDF namespace: sep
Bio2RDF identifier: 00075
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: device
type: Class
description: A device is an object which provides a mechanical advantage when used in a process. [PSI:Gel The PSI working group for gel based experiments]
subclass of: object [sep:00072]

substance [sep:00076]
Bio2RDF namespace: sep
Bio2RDF identifier: 00076
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: substance
type: Class
description: A substance is an Object in which every part is similar to every other in every relevant respect. More precisely, something is a Substance when it has only arbitrary pieces as parts - any parts have properties which are similar to those of the whole. Note that a Substance may nonetheless have physical properties that vary. For example, the temperature, chemical constitution, density, etc. may change from one part to another. An example would be a body of water. [SUMO:substance Suggested Upper Merged Ontology]
subclass of: object [sep:00072]

group [sep:00077]
Bio2RDF namespace: sep
Bio2RDF identifier: 00077
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: group
type: Class
description: A group is a defnined collection of objects, e.g. a flock of sheep, a herd of goats, or the local Boy Scout troop. [SUMO:group Suggested Upper Merged Ontology]
subclass of: collection [sep:00074]

consortium [sep:00079]
Bio2RDF namespace: sep
Bio2RDF identifier: 00079
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: consortium
type: Class
description: A consortium is an association of organisations for some definite purpose. [SUMO:consortium Suggested Upper Merged Ontology]
subclass of: organization [sep:00078]

The Human Proteome Organisation [sep:00080]
Bio2RDF namespace: sep
Bio2RDF identifier: 00080
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: The Human Proteome Organisation
type: Class
description: The Human Proteome Organisation (HUPO) is an international consortium of national proteomics research associations, government researchers, academic institutions, and industry partners. HUPO promotes the development and awareness of proteomics research, advocates on behalf of proteomics researchers throughout the world, and facilitates scientific collaborations between HUPO members and Initiatives. [PSI :GEL The PSI working group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: HUPO []
subclass of: consortium [sep:00079]

The Human Proteome Organisation Proteomics Standards Initiative [sep:00081]
Bio2RDF namespace: sep
Bio2RDF identifier: 00081
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: The Human Proteome Organisation Proteomics Standards Initiative
type: Class
description: The HUPO Proteomics Standards Initiative (PSI) defines community standards for data representation in proteomics to facilitate data comparision, exchange and verification. The PSI was founded at the HUPO meeting in Washington, April 28-29, 2002 (see Science 296, 827). [PSI:GEL The PSI Working group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: HUPO Proteomics Standards Initiative []
exact_synonym [obo_vocabulary:exact_synonym]: HUPO PSI []
exact_synonym [obo_vocabulary:exact_synonym]: PSI []
subclass of: consortium [sep:00079]

PSI GEL [sep:00082]
Bio2RDF namespace: sep
Bio2RDF identifier: 00082
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PSI GEL
type: Class
description: The PSI working group for Gel-based methods of analysis (GEL). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: proteomics standards initiative working group [sep:00013]

PSI MI [sep:00083]
Bio2RDF namespace: sep
Bio2RDF identifier: 00083
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PSI MI
type: Class
description: The PSI working group for Molecular Interactions (MI). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: proteomics standards initiative working group [sep:00013]

PSI MOD [sep:00084]
Bio2RDF namespace: sep
Bio2RDF identifier: 00084
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PSI MOD
type: Class
description: The PSI working group for Protein Modifications (MOD). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: proteomics standards initiative working group [sep:00013]

PSI MS [sep:00085]
Bio2RDF namespace: sep
Bio2RDF identifier: 00085
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PSI MS
type: Class
description: The PSI working group for Mass Spectrometry Data Interchange (MS). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: proteomics standards initiative working group [sep:00013]

PSI PI [sep:00086]
Bio2RDF namespace: sep
Bio2RDF identifier: 00086
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PSI PI
type: Class
description: The PSI working group for Proteomics Informatics (PI). [PSI :GEL The PSI Working group for gel based experiments]
subclass of: proteomics standards initiative working group [sep:00013]

PSI SP [sep:00087]
Bio2RDF namespace: sep
Bio2RDF identifier: 00087
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PSI SP
type: Class
description: The PSI working group for Separations and Sample Preparation (SP). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: proteomics standards initiative working group [sep:00013]

vendor [sep:00088]
Bio2RDF namespace: sep
Bio2RDF identifier: 00088
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: vendor
type: Class
description: A vendor is an organisation that supplier of goods or services of a commercial nature may be a manufacturer, importer, or wholesale distributor. [Dictionary of Finance and Investment Terms:vendor Dictionary of Finance and Investment Terms. Barron's Educational Series Inc 2006. Answers.com 24 Apr. 2007. http://www.answers.com/topic/vendor]
subclass of: organization [sep:00078]

educational organisation [sep:00089]
Bio2RDF namespace: sep
Bio2RDF identifier: 00089
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: educational organisation
type: Class
description: An educational organization is an organisation which is an institution of learning. Some examples are public and private K-12 schools, and colleges and universities. [SUMO:educational organisation Suggested Upper Merged Ontology]
subclass of: organization [sep:00078]

university [sep:00090]
Bio2RDF namespace: sep
Bio2RDF identifier: 00090
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: university
type: Class
description: A university is an educational organisations which admits students that have graduated from high school (known as undergraduate students) and students who have received a bachelor's degree (known as graduate students). A University confers both bachelor's and graduate degrees. [SUMO:university Suggested Upper Merged Ontology]
subclass of: educational organisation [sep:00089]

government organisation [sep:00091]
Bio2RDF namespace: sep
Bio2RDF identifier: 00091
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: government organisation
type: Class
description: A Government organization is the is an organisation that is concerned with the government of a Geopolitical Area at some level. They may be a suborganization of a government. [SUMO:government organisation Suggested Upper Merged Ontology]
subclass of: organization [sep:00078]

blot module [sep:00092]
Bio2RDF namespace: sep
Bio2RDF identifier: 00092
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: blot module
type: Class
description: A blot module is a device which permits the protocol of blotting to be performed. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: device [sep:00075]

electrical power supply [sep:00093]
Bio2RDF namespace: sep
Bio2RDF identifier: 00093
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: electrical power supply
type: Class
description: An electrical power supply is a device that supplies electricity. For example a power pack. [PSI:GEL The PSI Working group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: power pack []
subclass of: device [sep:00075]

gel dryer [sep:00094]
Bio2RDF namespace: sep
Bio2RDF identifier: 00094
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gel dryer
type: Class
description: A gel dryer is a device which permits drying of gels. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: device [sep:00075]

gel tank [sep:00095]
Bio2RDF namespace: sep
Bio2RDF identifier: 00095
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gel tank
type: Class
description: A gel tank is a device which holds a gel and running buffers to allow electrophoresis to be performed. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: device [sep:00075]

image acquisition device [sep:00096]
Bio2RDF namespace: sep
Bio2RDF identifier: 00096
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: image acquisition device
type: Class
description: An image acquisition device is a device which captures a digitiesed image of an object. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: device [sep:00075]

isoelectric focusing device [sep:00097]
Bio2RDF namespace: sep
Bio2RDF identifier: 00097
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: isoelectric focusing device
type: Class
description: An isoelectric focussing device is a device in which isoelectric focusing can be performed. [PSI:GEL The PSI Working group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: isoelctric focusing unit []
subclass of: device [sep:00075]

thermostatic circulator [sep:00098]
Bio2RDF namespace: sep
Bio2RDF identifier: 00098
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: thermostatic circulator
type: Class
description: A thermostatic circulator is a device which cools or heats a circulating liquid. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: device [sep:00075]

camera [sep:00099]
Bio2RDF namespace: sep
Bio2RDF identifier: 00099
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: camera
type: Class
description: A camera is an image acquistion device which is used for taking photographs (usually consisting of a lightproof box with a lens at one end and light-sensitive film at the other). [Wordnet:camera The PSI Working group for gel based experiments]
subclass of: image acquisition device [sep:00096]

scanner [sep:00100]
Bio2RDF namespace: sep
Bio2RDF identifier: 00100
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: scanner
type: Class
description: A scanner is an image acquistion device that generates a digital representation of an image for data input to a computer. [Wordnet:scanner Wordnet]
subclass of: image acquisition device [sep:00096]

protocol [sep:00101]
Bio2RDF namespace: sep
Bio2RDF identifier: 00101
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: protocol
type: Class
description: A protocol is a process which is a parameterizable description of a process. [FUGE:protocol Functional Genomics Experiment]
subclass of: process [sep:00073]

protein blocking [sep:00102]
Bio2RDF namespace: sep
Bio2RDF identifier: 00102
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: protein blocking
type: Class
description: A blocking protocol is a protocol to prevent non-specific protein interactions between it and the antibody used for detection of the target protein. Blocking of non-specific binding is achieved by placing the membrane in a dilute solution of protein - typically Bovine serum albumin (BSA) or non-fat dry milk, with a minute percentage of detergent such as Tween 20 or colloidal carbon. [Wikipedia:Blocking http://en.wikipedia.org/wiki/Western_blot]
subclass of: protocol [sep:00101]

biological substance [sep:00103]
Bio2RDF namespace: sep
Bio2RDF identifier: 00103
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: biological substance
type: Class
description: A biological substance is a substance which originates from a biological organism. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: substance [sep:00076]

chemical substance [sep:00104]
Bio2RDF namespace: sep
Bio2RDF identifier: 00104
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: chemical substance
type: Class
description: A chemical agent is a substance that is synthetic compounds that are not an analogue of anything occurring naturally and that can result in serious burns, paralysis, and death to Organisms. [SUMO:chemical agent Suggeste Upper Merged Ontology]
comment [obo_vocabulary:comment]: The ontology of chemical entities should be imported under this node, or created under this node, if not included in Chebi.
subclass of: substance [sep:00076]

gas substance [sep:00105]
Bio2RDF namespace: sep
Bio2RDF identifier: 00105
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gas substance
type: Class
description: A compound gas is a compound substance that is a mixture that satisfies two conditions.it is made up predominantly of things which are a Gas and any component other than Gas in the Mixture is in the form of fine particles which are suspended in the Gas. [SUMO:compound gas Suggested Upper Merged Ontology]
subclass of: substance [sep:00076]

compound liquid [sep:00106]
Bio2RDF namespace: sep
Bio2RDF identifier: 00106
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: compound liquid
type: Class
description: A compound liquid is a compound substance that satisfies two conditions. It is made up predominantly of things which are a Liquid and any component other than Liquid in the Mixture is in the form of fine particles which are suspended in the Liquid. [SUMO:liquid mixture Suggested Upper Merged Ontology]
subclass of: substance [sep:00076]

filter paper [sep:00107]
Bio2RDF namespace: sep
Bio2RDF identifier: 00107
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: filter paper
type: Class
description: Fliter paper is a compund substance which is a porous unsized paper used for filtering. [WordNet:filter paper WordNet]
subclass of: substance [sep:00076]

mobile phase [sep:00108]
Bio2RDF namespace: sep
Bio2RDF identifier: 00108
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: mobile phase
type: Class
description: Need DEF [to:add]
subclass of: substance role [sep:00029]

gel [sep:00110]
Bio2RDF namespace: sep
Bio2RDF identifier: 00110
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gel
type: Class
description: A gel is a compund substance which is a colloid in a more solid form than a solution. [Wordnet:gel Wordnet]
subclass of: substance [sep:00076]

gel excised analyte [sep:00111]
Bio2RDF namespace: sep
Bio2RDF identifier: 00111
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gel excised analyte
type: Class
description: A gel excised analyte is a compound substance which is a location on a gel which has been excised, cut out or removed. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: substance [sep:00076]

membrane substance [sep:00112]
Bio2RDF namespace: sep
Bio2RDF identifier: 00112
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: membrane substance
type: Class
description: A membrane compound is a compound substance which is a thin sheet of natural or synthetic material that is permeable to substances in solution. [:The American Heritage Dictionary of the English Language, Fourth Edition:membrane Houghton Mifflin Company 2004. Answers.com 15 Nov. 2006. http://www.answers.com/topic/membrane.]
subclass of: substance [sep:00076]

Parafilm [sep:00113]
Bio2RDF namespace: sep
Bio2RDF identifier: 00113
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Parafilm
type: Class
description: Parafilm is a compound substance which is a product of the American Can Company, consisting of a flexible film that is commonly used for sealing or protecting vessels. Because it is stretchy, moldable, waterproof, odorless, thermoplastic, semitransparent and self-adhering, it can be used to make a temporary flexible seal on open vessels (such as flasks or cuvettes) as one might employ plastic wrap. It can also be used to further seal a lidded container against moisture for long term storage. [Wikipedia:Parafilm http://en.wikipedia.org/wiki/Parafilm.]
subclass of: substance [sep:00076]

Coomassie blue [sep:00114]
Bio2RDF namespace: sep
Bio2RDF identifier: 00114
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Coomassie blue
type: Class
description: Coomassie blue is a chemical agent that nonspecifically stains proteins a strong blue colour. It is often used in gel electrophoresis. [Wikipedia:Coomassie blue http://en.wikipedia.org/wiki/Coomassie.]
exact_synonym [obo_vocabulary:exact_synonym]: Acid Blue 90 []
exact_synonym [obo_vocabulary:exact_synonym]: Brilliant Blue []
exact_synonym [obo_vocabulary:exact_synonym]: Brilliant Blue G []
exact_synonym [obo_vocabulary:exact_synonym]: Brilliant Blue G 250 []
exact_synonym [obo_vocabulary:exact_synonym]: C.I. 42655 []
subclass of: chemical substance [sep:00104]

solution [sep:00115]
Bio2RDF namespace: sep
Bio2RDF identifier: 00115
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: solution
type: Class
description: A solution is a compund liquid which is a homogeneous mixture of two or more substances, which may be solids, liquids, gases, or a combination of these. [:The American Heritage Dictionary of the English Language, Fourth Edition:solution Houghton Mifflin Company 2004. Answers.com 15 Nov. 2006. http://www.answers.com/topic/solution.]
subclass of: compound liquid [sep:00106]

suspension [sep:00116]
Bio2RDF namespace: sep
Bio2RDF identifier: 00116
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: suspension
type: Class
description: A suspension is a compund liquid in which microscopically visible particles are dispersed throughout a less dense liquid or gas from which they are easily filtered but not easily settled because of system viscocity or molecular interactions. [The American Heritage Dictionary of the English Language Fourth Edition:suspension Houghton Mifflin Company 2004. Answers.com 15 Nov. 2006. http://www.answers.com/topic/suspension.]
subclass of: compound liquid [sep:00106]

agarose sealing solution [sep:00117]
Bio2RDF namespace: sep
Bio2RDF identifier: 00117
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: agarose sealing solution
type: Class
description: Agarose sealing solution is a solution which is an agarose/buffer solution used to seal the first dimension gel to the second dimension gel in Two dimensional gel electrophoresis. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: solution [sep:00115]

buffer solution [sep:00118]
Bio2RDF namespace: sep
Bio2RDF identifier: 00118
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: buffer solution
type: Class
description: A solution selected or prepared to minimize changes in hydrogen ion concentration which would otherwise tend to occur as a result of a chemical reaction. In general, chemical buffers are systems which, once constituted, tend to resist further change due to external influences. Thus it is possible, for example, to make buffers resistant to changes in temperature, pressure, volume, redox potential, or acidity. The commonest buffer in chemical solution systems is the acid-base buffer, which resists changes in pH. [McGraw-Hill Encyclopedia of Science and Technology:buffer solution The McGraw-Hill Companies Inc. 2005. Answers.com 15 Nov. 2006. http://www.answers.com/topic/buffers-chemistry.]
exact_synonym [obo_vocabulary:exact_synonym]: chemical buffer []
subclass of: solution [sep:00115]

fixation solution [sep:00119]
Bio2RDF namespace: sep
Bio2RDF identifier: 00119
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: fixation solution
type: Class
description: A fixing solution is a solution used to fix proteins in a gel after gel electrophoresis has been performed. [PSI:GEL The PSI Working group for gel based experiments]
related_synonym [obo_vocabulary:related_synonym]: fixing solution []
subclass of: solution [sep:00115]

carrier ampholyte buffer [sep:00120]
Bio2RDF namespace: sep
Bio2RDF identifier: 00120
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: carrier ampholyte buffer
type: Class
description: A carrier ampholyte buffer is a buffer solutions which contains Carrier ampholytes. They enhance protein solubility by minimizing protein aggregation due to charge-charge interactions. [PSI:GEL The PSI Working group for gel based experiments]
related_synonym [obo_vocabulary:related_synonym]: Imobbilized pH gradient Buffer []
exact_synonym [obo_vocabulary:exact_synonym]: IPG Buffer []
subclass of: buffer solution [sep:00118]

electrophoresis buffer [sep:00121]
Bio2RDF namespace: sep
Bio2RDF identifier: 00121
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: electrophoresis buffer
type: Class
description: An electrophoresis buffer is a buffer solution which is used to perform electrophoresis. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: buffer solution [sep:00118]

loading buffer [sep:00122]
Bio2RDF namespace: sep
Bio2RDF identifier: 00122
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: loading buffer
type: Class
description: A loading buffer is a buffer solution which contains a suspended substance and facilitates loading onto another substance. For example in gel electrophoresis a sample is suspended in a loading buffer prior to application onto a gel matrix. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: buffer solution [sep:00118]

rehydration buffer [sep:00123]
Bio2RDF namespace: sep
Bio2RDF identifier: 00123
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: rehydration buffer
type: Class
description: A rehydration buffer is a buffer solution used to rehydrate a substance. For example in two dimensional gel electrophoresis the first dimension gel is rehydrated prior to the second dimension of electrophoresis. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: buffer solution [sep:00118]

sample buffer [sep:00124]
Bio2RDF namespace: sep
Bio2RDF identifier: 00124
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: sample buffer
type: Class
description: A sample buffer is a buffer solution which contains a biological substance used in the role of a sample. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: buffer solution [sep:00118]

transfer buffer [sep:00125]
Bio2RDF namespace: sep
Bio2RDF identifier: 00125
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: transfer buffer
type: Class
description: A transfer buffer is a buffer solution used to facilitate the transfer of one substance to another substance. For example; The buffer used in protein transfer procedure in immuno blots. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: buffer solution [sep:00118]

Laemelli buffer [sep:00126]
Bio2RDF namespace: sep
Bio2RDF identifier: 00126
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Laemelli buffer
type: Class
description: Laemmli bufferis an electrophoresis buffer which is used as a running buffer in gel electrophoresis. [PubMed:PMID:236308 www.pubmed.org]
subclass of: electrophoresis buffer [sep:00121]

gel matrix [sep:00127]
Bio2RDF namespace: sep
Bio2RDF identifier: 00127
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: gel matrix
type: Class
description: A gel matrix is a gel which the constituants of a gel form a matirx structure. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: gel [sep:00110]

agarose gel [sep:00128]
Bio2RDF namespace: sep
Bio2RDF identifier: 00128
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: agarose gel
type: Class
description: An agarose gel is a gel matrix which is composed of the chemical agent agarose. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: gel matrix [sep:00127]

polyacrylamide gel [sep:00129]
Bio2RDF namespace: sep
Bio2RDF identifier: 00129
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: polyacrylamide gel
type: Class
description: A polyacrylamide gel is a gel matrix which is the results of a chemical reactions of the chemical agent acrylamide and a chemical agent used in the role of a cross linker. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: gel matrix [sep:00127]

immobilized pH gradient gel [sep:00130]
Bio2RDF namespace: sep
Bio2RDF identifier: 00130
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: immobilized pH gradient gel
type: Class
description: An immobilised pH gradient gel is a polyacrylamide gel which has an immobilized pH gradient (IPG). It is created by covalently incorporating a gradient of acidic and basic buffering groups into a polyacrylamide gel at the time it is cast. [Pubmed:PMID:7142660 www.pubmed.org]
exact_synonym [obo_vocabulary:exact_synonym]: IPG Gel []
exact_synonym [obo_vocabulary:exact_synonym]: IPG strip []
subclass of: polyacrylamide gel [sep:00129]

immobiline dry strip [sep:00131]
Bio2RDF namespace: sep
Bio2RDF identifier: 00131
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: immobiline dry strip
type: Class
description: An immobiline dry strip is a immobilized pH gradinet gel which is a product of GE healthcare. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: immobilized pH gradient gel [sep:00130]

excised band [sep:00132]
Bio2RDF namespace: sep
Bio2RDF identifier: 00132
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: excised band
type: Class
description: An excised band is a gel excised analyte which has the geometric shape approximately that of a cuboid. [PSI:GEL The PSI Working group for gel based experiments]
related_synonym [obo_vocabulary:related_synonym]: gel band []
exact_synonym [obo_vocabulary:exact_synonym]: band []
exact_synonym [obo_vocabulary:exact_synonym]: protein band []
subclass of: gel excised analyte [sep:00111]

excised spot [sep:00133]
Bio2RDF namespace: sep
Bio2RDF identifier: 00133
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: excised spot
type: Class
description: An excised spot is a gel excised analyte which is approximately circlar in geometric shape. [PSI:GEL The PSI Working group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: gel spot []
exact_synonym [obo_vocabulary:exact_synonym]: protein spot []
exact_synonym [obo_vocabulary:exact_synonym]: spot []
subclass of: gel excised analyte [sep:00111]

nitrocellulose memebrane [sep:00134]
Bio2RDF namespace: sep
Bio2RDF identifier: 00134
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: nitrocellulose memebrane
type: Class
description: A nitrocellulose membrane is a memebrane compune which is a sticky membrane used for Western blots and immobilizing DNA. It is also used for immobilization of proteins, due to its non-specific affinity for amino acids. Nitrocellulose is widely used as support in diagnostic tests where antigen-antibody binding occur, e.g. pregnancy tests, U-Albumin tests and CRP. [Wikipedia:Nitrocellulose http://en.wikipedia.org/wiki/Nitrocellulose]
exact_synonym [obo_vocabulary:exact_synonym]: nitrocellulose paper []
subclass of: membrane substance [sep:00112]

PolyVinylidine DiFluoride [sep:00135]
Bio2RDF namespace: sep
Bio2RDF identifier: 00135
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PolyVinylidine DiFluoride
type: Class
description: A PolyVinylidine DiFluoride membrane is a membrane compound which is a highly non-reactive and pure thermoplastic fluoropolymer. It Can be used for binding proteins that are transferred from a variety of gel matrices. [Wikipedia:PVDF http://en.wikipedia.org/wiki/PVDF]
related_synonym [obo_vocabulary:related_synonym]: KYNAR []
exact_synonym [obo_vocabulary:exact_synonym]: PVDF []
exact_synonym [obo_vocabulary:exact_synonym]: PVDF membrane []
subclass of: membrane substance [sep:00112]

biological stain product [sep:00136]
Bio2RDF namespace: sep
Bio2RDF identifier: 00136
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: biological stain product
type: Class
description: A biological stain product is a compound substance which has been manufactued and sold as a product. A biological stain product reacts or concentrates in different parts of a cell or tissue. It is these properties that are used to highlight or identifiy specific parts or areas or substances. [Wikipedia:Staining Biology http://en.wikipedia.org/wiki/Staining_%28biology%29]
comment [obo_vocabulary:comment]: Substances which are chemical substances in their own right should be recorded directly under chemical substance and should not be confused with a manufactured staining product, rather than a chemical susbtance which has been used in a role as a stain
subclass of: substance [sep:00076]

SimplyBlue SafeStain [sep:00137]
Bio2RDF namespace: sep
Bio2RDF identifier: 00137
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: SimplyBlue SafeStain
type: Class
description: A SimplyBlue SafeStain is a biological stain product which is a fast, sensitive and safe Colloidal Coomassie G-250-based stain for nanogram-level detections of proteins, manufactured by Invitrogen. [Invitrogen:SimplyBlue SafeStain www.invitrogen.com]
subclass of: biological stain product [sep:00136]

SilverQuest Silver Stain [sep:00138]
Bio2RDF namespace: sep
Bio2RDF identifier: 00138
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: SilverQuest Silver Stain
type: Class
description: SilverQuest Silver Staining is a biological stain product that provides maximal silver staining sensitivity with minimal protein modification for optimal mass spectrometry results, manufactured by invitrogen. [Invitrogen:SilverQuest Silver Stain www.invitrogen.com]
subclass of: biological stain product [sep:00136]

biological blot protocol [sep:00139]
Bio2RDF namespace: sep
Bio2RDF identifier: 00139
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: biological blot protocol
type: Class
description: A biological blot protocol is a protocol which defines the transfer of proteins, DNA or RNA, onto a carrier (for example, a nitrocellulose PVDF or nylon membrane). In many instances, this is done after a gel electrophoresis, transferring the molecules from the gel onto the blotting membrane, and other times adding the samples directly onto the membrane. [Wikipedia:Blot (Biology) http://en.wikipedia.org/wiki/Blot_%28biology%29]
subclass of: protocol [sep:00101]

capillary electrophoresis [sep:00140]
Bio2RDF namespace: sep
Bio2RDF identifier: 00140
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: capillary electrophoresis
type: Class
description: Capillary electrophoresis is a protocol which can be used to separate ionic species by their charge and frictional forces. In traditional electrophoresis, electrically charged analytes move in a conductive liquid medium under the influence of an electric . Introduced in the 1960s, the technique of capillary electrophoresis (CE) was designed to separate species based on their size to charge ratio in the interior of a small capillary filled with an electrolyte. [Wikipedia:Capillary Electrophroesis http://en.wikipedia.org/wiki/Capillary_electrophoresis]
exact_synonym [obo_vocabulary:exact_synonym]: CE []
subclass of: protocol [sep:00101]

detection [sep:00141]
Bio2RDF namespace: sep
Bio2RDF identifier: 00141
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: detection
type: Class
description: A detection is a protocol which allows the detection, or permits the viewing of a substance. This can involve such process as; staining the proteins on the gel (direct detection), exposing the gel which contains radiolabel sample to photographic film, or transfer of proteins to a matrix such as in immunoblotting (indirect detection). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

enzyme digestion [sep:00142]
Bio2RDF namespace: sep
Bio2RDF identifier: 00142
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: enzyme digestion
type: Class
description: Enzyme digestion is a protocol that describes the digestion of a protein by an enzyme. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

electrophoresis [sep:00143]
Bio2RDF namespace: sep
Bio2RDF identifier: 00143
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: electrophoresis
type: Class
description: An electrophoresis is a protocol for capturing the details of electrophoresis. The runnning conditions applied to an electrophoresis substrate in terms of voltage against time and temperature if appropriate. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

equilibration [sep:00144]
Bio2RDF namespace: sep
Bio2RDF identifier: 00144
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: equilibration
type: Class
description: Equilibration is a protocol to bring to a chemical stasis or equilibrium. [Wordnet:equilibrium WordNet 1.7.1]
subclass of: protocol [sep:00101]

first dimension gel equilibration [sep:00145]
Bio2RDF namespace: sep
Bio2RDF identifier: 00145
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: first dimension gel equilibration
type: Class
description: The first dimension gel equilibration is a protocol which equilibrates the first dimension gel in Two dimensional gel electrophoresis protocol with the buffer system required for the second-dimension separation. [PSI:GEL The PSI Working group for gel based experiments]
related_synonym [obo_vocabulary:related_synonym]: equilibration step []
exact_synonym [obo_vocabulary:exact_synonym]: equlibration []
exact_synonym [obo_vocabulary:exact_synonym]: gel equilibration []
subclass of: equilibration [sep:00144]

excision [sep:00146]
Bio2RDF namespace: sep
Bio2RDF identifier: 00146
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: excision
type: Class
description: An excision is a protocol that described removal of a defined location from a substance. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

image acquisition [sep:00147]
Bio2RDF namespace: sep
Bio2RDF identifier: 00147
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: image acquisition
type: Class
description: Image acquisition is a protocol which is used to acquire a digitised image. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

inter dimension protocol [sep:00148]
Bio2RDF namespace: sep
Bio2RDF identifier: 00148
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: inter dimension protocol
type: Class
description: Inter dimension protocol is a protocol which is used to record any process or processes applied to, or carried out between the dimensions of gel electrophoresis. This includes processes such as equilibration, reduction and alkylation. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

isoelectric focusing [sep:00149]
Bio2RDF namespace: sep
Bio2RDF identifier: 00149
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: isoelectric focusing
type: Class
description: Isoelectric focussing is a protocol that separates a sample (ususally protein) along a separation matrix (usually gel) based on Isoelectric point (pI). [PubMed:PMID:7142660 www.pubmed.org]
subclass of: protocol [sep:00101]

one dimensional gel electrophoresis [sep:00150]
Bio2RDF namespace: sep
Bio2RDF identifier: 00150
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: one dimensional gel electrophoresis
type: Class
description: One dimensional gel electrophoresis is a protocol which separates a substance based on a single characteristic or dimension of the substance. [PSI:GEL The PSI Working group for gel based experiments]
exact_synonym [obo_vocabulary:exact_synonym]: 1D []
subclass of: protocol [sep:00101]

sample loading protocol [sep:00151]
Bio2RDF namespace: sep
Bio2RDF identifier: 00151
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: sample loading protocol
type: Class
description: Sample loading protocol is a protocol which is the loading a substance (sample) onto another substance. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

image analysis [sep:00152]
Bio2RDF namespace: sep
Bio2RDF identifier: 00152
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: image analysis
type: Class
description: Image analysis protocol is a protocol which is the process of the analysis of digitised images. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

transfer protocol [sep:00153]
Bio2RDF namespace: sep
Bio2RDF identifier: 00153
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: transfer protocol
type: Class
description: A transfer protocol is a protocol which is the conveyance or removal an entity from one location to another. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: protocol [sep:00101]

protein transfer protocol [sep:00154]
Bio2RDF namespace: sep
Bio2RDF identifier: 00154
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: protein transfer protocol
type: Class
description: A protein transfer protocol is a protocol which is the movement of proteins from one substance to another substance, possibly via a transfer medium. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: transfer protocol [sep:00153]

two dimensional gel electrophoresis [sep:00155]
Bio2RDF namespace: sep
Bio2RDF identifier: 00155
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: two dimensional gel electrophoresis
type: Class
description: Two dimensional gel electrophoresis is a protocol which is the separation of proteins along two gel matrices based on a two characteristics or dimensions of the protein. [Pubmed:PMID:236308 www.pubmed.org]
exact_synonym [obo_vocabulary:exact_synonym]: 2DG []
exact_synonym [obo_vocabulary:exact_synonym]: 2DGE []
subclass of: protocol [sep:00101]

northern blot [sep:00156]
Bio2RDF namespace: sep
Bio2RDF identifier: 00156
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: northern blot
type: Class
description: A northern blot is a biological blot protocol which is used in molecular biology research to study gene expression. It takes its name from the similarity of the procedure to the Southern blot procedure, named for biologist Edwin Southern, used to study DNA, with the key difference that RNA, rather than DNA, is the substance being analyzed by electrophoresis and detection with a hybridization probe. [Wikipeda:northern blot http://en.wikipedia.org/wiki/Northern_blot]
subclass of: biological blot protocol [sep:00139]

Southern blot [sep:00157]
Bio2RDF namespace: sep
Bio2RDF identifier: 00157
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Southern blot
type: Class
description: A Southern blot is a biological blot protocol which is used in molecular biology to enhancing the result of an agarose gel electrophoresis by marking specific DNA sequences. The method is named after its inventor, the British biologist Edwin Southern. [Wikipedia:Southern blot http://en.wikipedia.org/wiki/Southern_blot]
subclass of: biological blot protocol [sep:00139]

western blot [sep:00158]
Bio2RDF namespace: sep
Bio2RDF identifier: 00158
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: western blot
type: Class
description: A western blot is a biological blot protocol which is used in molecular biology/biochemistry/immunogenetics to detect protein in a given sample of tissue homogenate or extract. It uses gel electrophoresis to separate denatured proteins by mass. The proteins are then transferred out of the gel and onto a membrane (typically nitrocellulose), where they are probed using antibodies specific to the protein. [Wikipedia:western blot http://en.wikipedia.org/wiki/Western_blot]
related_synonym [obo_vocabulary:related_synonym]: immunoblot []
subclass of: biological blot protocol [sep:00139]

direct detection [sep:00159]
Bio2RDF namespace: sep
Bio2RDF identifier: 00159
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: direct detection
type: Class
description: Direct detection is a detection protocol which is the detection of a substance directly on the susbtances location. For example in gel electrophoresis this can involve such process as; staining proteins on the gel. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: detection [sep:00141]

indirect detection [sep:00160]
Bio2RDF namespace: sep
Bio2RDF identifier: 00160
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: indirect detection
type: Class
description: Indirect detection is a detection protocol that allows one substance to be detected using an intermediate substance. For example in gel electrophoresis exposing the gel which contains radiolabel sample to photographic film, or transfer of proteins to a matrix such as in immunoblotting (indirect detection). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: detection [sep:00141]

staining [sep:00161]
Bio2RDF namespace: sep
Bio2RDF identifier: 00161
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: staining
type: Class
description: Staining is a direct detection which is a biochemical technique of adding a class-specific (DNA, proteins, lipids, carbohydrates) dye to a substrate to qualify or quantify the presence of a specific compound. [Wikipedia:staining http://en.wikipedia.org/wiki/Staining]
subclass of: direct detection [sep:00159]

Coomassie staining [sep:00162]
Bio2RDF namespace: sep
Bio2RDF identifier: 00162
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Coomassie staining
type: Class
description: Coomassie staining is a staining which uses the chemical susbstance Coomassie blue, nonspecifically stains proteins a strong blue colour. It is often used in gel electrophoresis. [WIkipedia:Coomassie staining http://en.wikipedia.org/wiki/Staining#Coomassie_blue]
subclass of: staining [sep:00161]

silver staining [sep:00163]
Bio2RDF namespace: sep
Bio2RDF identifier: 00163
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: silver staining
type: Class
description: Silver staining is a staining which uses silver to stain a substance. [Wikipedia:silver staining http://en.wikipedia.org/wiki/Staining#Silver_staining]
subclass of: staining [sep:00161]

chemilumninescent detect [sep:00164]
Bio2RDF namespace: sep
Bio2RDF identifier: 00164
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: chemilumninescent detect
type: Class
description: Chemiluminescent detection is an indirect detection protocol that detects proteins with a substrate that will luminesce when exposed to the reporter on the secondary antibody. The light is then detected by photographic film, and more recently by CCD cameras which captures a digital image of the western blot. [WIkipedia:Chemiluminescence http://en.wikipedia.org/wiki/Western_blot#Chemiluminescence]
subclass of: indirect detection [sep:00160]

colorimetric detection [sep:00165]
Bio2RDF namespace: sep
Bio2RDF identifier: 00165
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: colorimetric detection
type: Class
description: Colorimetric detection is an indirect detection protocol that detects proteins with a substrate that reacts with the reporter enzyme (such as peroxidase) that is bound to the secondary antibody. This converts the soluble dye into an insoluble form of a different colour that precipitates next to the enzyme and thereby stains the nitrocellulose membrane. Development of the blot is then stopped by washing away the soluble dye. Protein levels are evaluated through densitometry (how intense the stain is) or spectrophotometry. [WIkipedia:colormetric detection http://en.wikipedia.org/wiki/Western_blot#Colorimetric_detection]
subclass of: indirect detection [sep:00160]

flourescent detection [sep:00166]
Bio2RDF namespace: sep
Bio2RDF identifier: 00166
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: flourescent detection
type: Class
description: Flourescent detection is a indirect detection protocol.The fluorescently labeled probe is excited by light and the emission of the excitation is then detected by a photosensor such as CCD camera equipped which appropriate emission filters which captures a digital image of the western blot and allows further data analysis such molecular weight analysis and a quantitative western blot analysis. Fluorescence is considered to be among the most sensitive detection methods for blotting analysis. [Wikipedia:flourescent detection http://en.wikipedia.org/wiki/Western_blot#Fluorescent_detection]
subclass of: indirect detection [sep:00160]

immuno detection [sep:00167]
Bio2RDF namespace: sep
Bio2RDF identifier: 00167
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: immuno detection
type: Class
description: Immuno detection is an indirect detection protocol which is the use of an antibody-based method to detect a specific protein in a sample. [Wikipedia:immunostaining http://en.wikipedia.org/wiki/Immunostaining]
subclass of: indirect detection [sep:00160]

primary antibody probing [sep:00168]
Bio2RDF namespace: sep
Bio2RDF identifier: 00168
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: primary antibody probing
type: Class
description: Primary antibody probing is an indeirect detection protocol. Antibodies are generated when a host species or immune cell culture is exposed to the protein of interest (or a part thereof). Normally a part of the immune response, here they are harvested and used as sensitive and specific detection tools that bind the protein directly - hence primary antibody. [Wikipedia:primary antibody probing http://en.wikipedia.org/wiki/Western_blot#Two_step]
subclass of: indirect detection [sep:00160]

secondary antibody probing [sep:00169]
Bio2RDF namespace: sep
Bio2RDF identifier: 00169
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: secondary antibody probing
type: Class
description: Secondary antibody probing is an indirect detection protocol. The unbound primary antibody, it is exposed to another antibody, directed at a species-specific portion of the primary antibody. This is known as a secondary antibody, and due to its targeting properties, tends to be referred to as anti-mouse, anti-goat, etc. The secondary antibody is usually linked to biotin or to a reporter enzyme such as alkaline phosphatase or horseradish peroxidase. This step confers an advantage in that several secondary antibodies will bind one primary antibody, providing enhanced signal. [Wikipedia:secondary antobody probing http://en.wikipedia.org/wiki/Western_blot#Two_step]
subclass of: indirect detection [sep:00160]

radioactive detection [sep:00170]
Bio2RDF namespace: sep
Bio2RDF identifier: 00170
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: radioactive detection
type: Class
description: Radio active detection is an indirect detection protocol that involves Radioactive labels that do not require enzyme substrates, but rather allow the placement of medical X-ray film directly against the radio active matierial which develops as it is exposed to the label and creates dark regions which correspond to the protein bands of interest (see image to the right). [Wikipedia :radioactive detection http://en.wikipedia.org/wiki/Western_blot#Radioactive_detection]
subclass of: indirect detection [sep:00160]

agarose gel electrophoresis [sep:00171]
Bio2RDF namespace: sep
Bio2RDF identifier: 00171
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: agarose gel electrophoresis
type: Class
description: Agarose gel electrophoresis is a one dimensional gel electrophoresis protocol which use the application of voltage to separate a sample along a separation medium which is a gel matrix made of agarose. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: one dimensional gel electrophoresis [sep:00150]

polyacrylamide gel electrohoresis [sep:00172]
Bio2RDF namespace: sep
Bio2RDF identifier: 00172
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: polyacrylamide gel electrohoresis
type: Class
description: Polyacrylamide gel electrophoresis is a one dimensional gel electrophoresis protocol which use the application of voltage to separate a sample along a separation medium which is a gel matrix made of polyacrylamide. [Pubmed:PMID:5432063 www.pubmed.org]
subclass of: one dimensional gel electrophoresis [sep:00150]

sodium dodecyl sulfate polyacrylamide gel electrophoresis [sep:00173]
Bio2RDF namespace: sep
Bio2RDF identifier: 00173
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: sodium dodecyl sulfate polyacrylamide gel electrophoresis
type: Class
description: Sodium dodecyl sulfate polyacrylamide gel electrophoresis is a polyacrylamide gel electrophoresis which which the charge of the proteins results from their binding SDS. [Pubmed:PMID: 5432063 www.pubmed.org]
exact_synonym [obo_vocabulary:exact_synonym]: SDS PAGE []
subclass of: polyacrylamide gel electrohoresis [sep:00172]

cup loading [sep:00174]
Bio2RDF namespace: sep
Bio2RDF identifier: 00174
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: cup loading
type: Class
description: A cup loading protocol is a sample loading protocol which the sample is pipetted into sample cups precisely positioned on the surface of the gels (usually in first dimension). [PSI:GEL The PSI Working group for gel based experiments]
subclass of: sample loading protocol [sep:00151]

paper bridge loading [sep:00175]
Bio2RDF namespace: sep
Bio2RDF identifier: 00175
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: paper bridge loading
type: Class
description: Paper bridge loading is a sample loading protocol that is the loading of samples on a gel prior to electrophoresis using a paper bridge. [Pubmed:PMID:11271483 www.pubmed.org]
subclass of: sample loading protocol [sep:00151]

rehydration loading [sep:00176]
Bio2RDF namespace: sep
Bio2RDF identifier: 00176
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: rehydration loading
type: Class
description: Rehydration loading is a sample loading protocol which rehydrates the gel at the same time as the application of sample to a gel. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: sample loading protocol [sep:00151]

well loading [sep:00177]
Bio2RDF namespace: sep
Bio2RDF identifier: 00177
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: well loading
type: Class
description: Well loading is a sample loading protocols that directly loads a sample directly in the wells of a gel prior to electrophoresis. [PSI:GEL The PSI GEL workin group]
subclass of: sample loading protocol [sep:00151]

one dimensional gel electrophoresis image analysis [sep:00178]
Bio2RDF namespace: sep
Bio2RDF identifier: 00178
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: one dimensional gel electrophoresis image analysis
type: Class
description: One dimensional gel electrophoresis image analysis is an image analysis protocol which is the analysis of multiple images produces as a result of one dimensional gel electrophoresis. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: image analysis [sep:00152]

two dimensional gel electrophoresis image analysis [sep:00179]
Bio2RDF namespace: sep
Bio2RDF identifier: 00179
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: two dimensional gel electrophoresis image analysis
type: Class
description: Two dimensional gel electrophoresis image analysis is an image analysis protocol which is the analysis of multiple images produces as a result of two dimensional gel electrophoresis. [PSI:GEL The PSI Working group for gel based experiments]
subclass of: image analysis [sep:00152]

difference gel electrophoresis [sep:00180]
Bio2RDF namespace: sep
Bio2RDF identifier: 00180
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: difference gel electrophoresis
type: Class
description: Difference gel electrophoresis is a two dimensional gel electrophoresis protocol which is where three different protein samples can be labeled with fluorescent dyes (for example Cy3, Cy5, Cy2) prior to two-dimensional electrophoresis. After the gel electrophoresis, the gel is scanned with the excitation wavelength of each dye one after the other. This technique is used to see changes in protein abundancy (for example, between a sample of a healthy person and a sample of a diseased person). [Pubmed:PMID:9420172 www.pubmed.org]
exact_synonym [obo_vocabulary:exact_synonym]: DIGE []
subclass of: two dimensional gel electrophoresis [sep:00155]

PubMed [sep:00181]
Bio2RDF namespace: sep
Bio2RDF identifier: 00181
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: PubMed
type: Class
description: PubMed is data which is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed includes links to full text articles and other related resources. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed. [Pubmed:Pubmed PubMed is a service of the U.S. National Library of Medicine that includes over 16 million citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. PubMed includes links to full text articles and other related resources. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed]
subclass of: digital data set [sep:00011]

WordNet [sep:00182]
Bio2RDF namespace: sep
Bio2RDF identifier: 00182
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: WordNet
type: Class
description: WordNet is data which is an online lexical reference system whose design is inspired by current psycholinguistic theories of human lexical memory. English nouns, verbs, adjectives and adverbs are organized into synonym: sets, each representing one underlying lexical concept. Different relations link the synonym: sets. [WordNet:WordNet http://wordnet.princeton.edu/]
subclass of: digital data set [sep:00011]

Cy2 [sep:00183]
Bio2RDF namespace: sep
Bio2RDF identifier: 00183
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cy2
type: Class
description: Cyanine is a chemical substance which is a polymer hydroxide formula achieved in 1986 by the Universal Chemical Society. It is used as a dye for CD-R and DVD-R media. Cyanine dyes are mostly green or light blue in color, and are chemically unstable. This made cyanine discs unsuitable for archival use, as they can fade and become unreadable in a few years. [Wikipedia:Cyanine http://en.wikipedia.org/wiki/Cyanine]
exact_synonym [obo_vocabulary:exact_synonym]: cyanine []
subclass of: chemical substance [sep:00104]

Cy3 [sep:00184]
Bio2RDF namespace: sep
Bio2RDF identifier: 00184
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cy3
type: Class
description: Cy3 is a chemical susbstance that has a reactive N-hydroxysuccinimide group. Cy3 is excited maximally at 550nm and emits maximally at 570nm, in the green part of the spectruum; quantum yield is 0.15; FW=766. [Wikipedia:Cy3 http://en.wikipedia.org/wiki/Cy3]
exact_synonym [obo_vocabulary:exact_synonym]: indocarbocyanine []
subclass of: chemical substance [sep:00104]

Cy5 [sep:00185]
Bio2RDF namespace: sep
Bio2RDF identifier: 00185
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cy5
type: Class
description: Cy5 is a chemical substance that has a reactive N-hydroxysuccinimide group that reacts readily with amine groups. Cy5 instead is excited maximally at 649 and emits maximally at 670nm, in the red part of the spectruum; quantum yield is 0.28. FW=792. [Wikipedia:Cy5 http://en.wikipedia.org/wiki/Cy3]
exact_synonym [obo_vocabulary:exact_synonym]: Indodicarbocyanine []
subclass of: chemical substance [sep:00104]

label [sep:00186]
Bio2RDF namespace: sep
Bio2RDF identifier: 00186
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: label
type: Class
description: A label is an attribute which is an identifying or descriptive marker or token that is attached to an object. [Wordnet:label WordNet]
subclass of: attribute [sep:00004]

flourescent label [sep:00187]
Bio2RDF namespace: sep
Bio2RDF identifier: 00187
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: flourescent label
type: Class
description: A fluorescent label is a label that is either a fluorescent molecule, or an enzyme system that generates a fluorescent product, which is linked to a ligand or binder tracer. The tracer is quantified by measuring the amount of light emitted by the tracer at a specific wavelength after exciting the tracer with incident light of a shorter wavelength. Fluorescent molecules include fluorescein and lanthanide chelates such as europium, samarium, and terbium. [Brendan Glossart:flourescent label http://www.brendan.com/glossary.html#f]
subclass of: label [sep:00186]

SYPRO Ruby [sep:00188]
Bio2RDF namespace: sep
Bio2RDF identifier: 00188
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: SYPRO Ruby
type: Class
description: SYPRO Ruby is a biological stain product that is a ready to use, ultra sensitive, luminescent stain for the detection of proteins separated by PAGE. Designed especicially for 2D PAGE, SYPRO Ruby also performs impressively in PAGE and IEF gels. Stains glycoproteins, lipoproteins, calcium binding proteins, fibrillar proteins and others. Will not stain extraneous nucleic acids. Sensitive to 1 ng of protein. [Invitrogen:SYPRO Ruby Invitrogen]
subclass of: biological stain product [sep:00136]

manufacturer [sep:00189]
Bio2RDF namespace: sep
Bio2RDF identifier: 00189
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: manufacturer
type: Class
description: A person, an enterprise, or an entity that manufactures something. [:The American Heritage Dictionary of the English Language, Fourth Edition:manufacturer Houghton Mifflin Company 2004. Answers.com 28 Nov. 2006.]
subclass of: role [sep:00010]

bisacrylamide [sep:00190]
Bio2RDF namespace: sep
Bio2RDF identifier: 00190
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: bisacrylamide
type: Class
description: A bisacrylaimde is a chemical substance that has a molecular formula of C7H10O2N2. Often a primary component of polyacrylamide gels used for sequencing and protein electrophoresis. [http://www.leighlabs.com/MSDS/bisacry.htm:bisacrylamide http://www.leighlabs.com/MSDS/bisacry.htm]
subclass of: chemical substance [sep:00104]

photographic film [sep:00191]
Bio2RDF namespace: sep
Bio2RDF identifier: 00191
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: photographic film
type: Class
description: need def [add:def]
subclass of: substance [sep:00076]

phosphor screen [sep:00192]
Bio2RDF namespace: sep
Bio2RDF identifier: 00192
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: phosphor screen
type: Class
description: def [def:add]
subclass of: substance [sep:00076]

digital entitiy role [sep:00193]
Bio2RDF namespace: sep
Bio2RDF identifier: 00193
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: digital entitiy role
type: Class
description: def [def:add]
subclass of: role [sep:00010]

picking gel feature location set [sep:00194]
Bio2RDF namespace: sep
Bio2RDF identifier: 00194
type: sep resource [sep_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: picking gel feature location set
type: Class
description: def [def:add]
subclass of: digital entitiy role [sep:00193]