MSV: Metagenome Sample Vocabulary
type: Ontology
version info: Version 0.11
creator: Junichi Takehara, Hiroshi Mori
description: An ontology for metagenome sample metadata.

metagenome sample vocabulary
type: Class

location
type: AnnotationProperty
alternative label: Geogrphic location (country and/or sea, region)
alternative label: SAMPLE_LOCATION
alternative label: Geographic location (country)
alternative label: General Area
alternative label: geographic location (country and/or sea,region)
alternative label: Geographic location (Country)
alternative label: Collection place
alternative label: geographic location (country)
alternative label: GeographicLocation
alternative label: Geographical location (country:region, location)
sub property of: environmental description
alternative label: general_location
alternative label: geographic_location
alternative label: Geographic location (country:region,area)
alternative label: Area
alternative label: country
alternative label: geographic location (Country)
alternative label: Country
alternative label: Sample Location
alternative label: NATION
alternative label: vent_field
alternative label: geographic location
alternative label: Geographic location (locality)
alternative label: Geographic location (country and/or sea,region)
alternative label: seamount
alternative label: Geographical location
alternative label: geo_loc_name
alternative label: ocean_basin
alternative label: iho_area
alternative label: regime (bottom depth)
alternative label: Geographic location (area)

environmental description
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

metagenome sample vocabulary property
type: AnnotationProperty

is related to
type: AnnotationProperty
sub property of: SRA description

SRA description
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

vanadium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Vanadium concentration

concentration of chemical substance
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

organic matter concentration
type: AnnotationProperty
sub property of: concentration of chemical substance

amplicon16S class
type: AnnotationProperty
sub property of: genome mapping

genome mapping
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

age unit
type: AnnotationProperty
sub property of: host description
alternative label: age_unit

host description
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

pH
type: AnnotationProperty
sub property of: chemical description
alternative label: ph

chemical description
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

analyte type
type: AnnotationProperty
sub property of: experiment description
alternative label: analyte_type

experiment description
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

bacterial carbon average
type: AnnotationProperty
sub property of: chemical description

sand content standard deviation
type: AnnotationProperty
sub property of: environmental description
alternative label: Sand Standard Deviation

wind speed
type: AnnotationProperty
sub property of: environmental description
alternative label: Wind Speed (kts)
alternative label: Wind Speed

shannon index
type: AnnotationProperty
sub property of: experiment description
alternative label: Shannon Index

filter manufacturer
type: AnnotationProperty
sub property of: experiment description
alternative label: Filter_Manufacturer

feeding process
type: AnnotationProperty
sub property of: host description
alternative label: Feeding process

alkalinity
type: AnnotationProperty
sub property of: chemical description
alternative label: Alkalinity
alternative label: alkalinity_microEquivalentPerLiter

cell karyotype
type: AnnotationProperty
sub property of: cell description

cell description
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

distance along trench
type: AnnotationProperty
sub property of: environmental description
alternative label: Distance along trench (cm)

potential bicarbonate methanogenesis
type: AnnotationProperty
sub property of: chemical description
alternative label: Potential bicarbonate methanogenesis

metagenome 16S family
type: AnnotationProperty
sub property of: genome mapping

beta glucosidase average
type: AnnotationProperty
sub property of: chemical description

organic matter content
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: organic matter

uranium IV total uranium ratio
type: AnnotationProperty
sub property of: chemical description
alternative label: U(IV)/ Total U

biomaterial treatment
type: AnnotationProperty
sub property of: experiment description
alternative label: Biomaterial treatment

height or length
type: AnnotationProperty
sub property of: host description
alternative label: height_or_length

DNA quantity
type: AnnotationProperty
sub property of: experiment description
alternative label: dna_quant
alternative label: dna_conc

latitudinal second
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Latitudinal second

latitude and longitude
type: AnnotationProperty
alternative label: Geographic location (latitude, longitude)
alternative label: Location
alternative label: Geographic location (latitude and longitude)
alternative label: lat_lon
alternative label: lat_lon (N:W)
alternative label: Geographical location (lat_lon)
sub property of: metagenome sample vocabulary property
alternative label: geographical location (longitude and longitude)
alternative label: geographic location (latitude and longitude)
alternative label: lat-lon

potassium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: potassium
alternative label: potassium_partPerMillion

nitrite nitrate concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Nitrite Nitrate

water content
type: AnnotationProperty
sub property of: chemical description
alternative label: water content of soil
alternative label: water_content_soil
alternative label: Water content
alternative label: Water Average
alternative label: Water content of soil

journal mame
type: AnnotationProperty
sub property of: SRA description

organism count
type: AnnotationProperty
sub property of: function
alternative label: organism_count

antibody target description
type: AnnotationProperty
sub property of: chemical description
alternative label: antibody targetdescription

PCR conditions
type: AnnotationProperty
sub property of: experiment description
alternative label: pcr conditions

visibile oil contamination level
type: AnnotationProperty
sub property of: chemical description
alternative label: Visibile oil contamination level

date
type: AnnotationProperty
sub property of: experiment description
alternative label: Date
alternative label: Date mm/dd/yy

bacterial production
type: AnnotationProperty
sub property of: chemical description
alternative label: bacterial_production

amplicon16S genus
type: AnnotationProperty
sub property of: genome mapping

longitude
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Longitude
alternative label: geographic location (longitude)
alternative label: Geographic location (longitude)
alternative label: lon
alternative label: Geographic location (Longitude)

amplicon16S family
type: AnnotationProperty
sub property of: genome mapping

age days
type: AnnotationProperty
sub property of: host description
alternative label: AgeDays

density
type: AnnotationProperty
sub property of: chemical description
alternative label: Density

hours since wash
type: AnnotationProperty
sub property of: experiment description

season
type: AnnotationProperty
sub property of: environmental description

BMI
type: AnnotationProperty
sub property of: host description
alternative label: body_mass_index

lipase average
type: AnnotationProperty
sub property of: chemical description

target molecules
type: AnnotationProperty
sub property of: experiment description
alternative label: target-molecules

birth delivery
type: AnnotationProperty
sub property of: host description

KO count
type: AnnotationProperty
sub property of: function

other tag
type: AnnotationProperty
sub property of: SRA description

chitinase standard error
type: AnnotationProperty
sub property of: chemical description

texture percent sand
type: AnnotationProperty
sub property of: environmental description
alternative label: Texture - percent sand

MBGD Ortholog Count
type: AnnotationProperty
sub property of: ortholog

palm size
type: AnnotationProperty
sub property of: host description
alternative label: PalmSize

lead concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: bioavailable Pb concentration
alternative label: Pb concentration
alternative label: total Pb concentration

cow milk
type: AnnotationProperty
sub property of: host description
alternative label: CowMilk

dominant hand
type: AnnotationProperty
sub property of: host description
alternative label: dominant_hand

dissolved oxygen concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: diss_oxygen_milliliterPerLiter
alternative label: dissolved oxygen
alternative label: Dissolved Oxygen
alternative label: Dissolved Oxygen (mg/l)
alternative label: dissolved_oxygen
alternative label: diss_oxygen

fluorescence concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Fluorescence
alternative label: Fluorescence (micro g/l)
alternative label: fluorescence
alternative label: Fluorescence (ug/l)

read number
type: AnnotationProperty
sub property of: experiment description
alternative label: spots
alternative label: Total spots
alternative label: Total points

units
type: AnnotationProperty
sub property of: SRA description

alkaline phospatase km
type: AnnotationProperty
sub property of: chemical description

gravel content
type: AnnotationProperty
sub property of: environmental description
alternative label: Gravel

special diet
type: AnnotationProperty
sub property of: host description

phosphate concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Phosphate (??mol/ l)
alternative label: phosphate
alternative label: Phosphate
alternative label: po4
alternative label: Phosphate (?mol/ l)
alternative label: Phosphate (PO4)

carbon dioxide concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: carb_dioxide
alternative label: carb_dioxide_p_uatm
alternative label: diss_carb_dioxide
alternative label: Carbon dioxide
alternative label: pCO2 concentrations

iron concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Iron (Fe)
alternative label: Iron in groundwater
alternative label: Iron concentration
alternative label: Dissolved Iron (Fe II)

cell numbers average
type: AnnotationProperty
sub property of: cell description

assembly
type: AnnotationProperty
sub property of: experiment description

primer
type: AnnotationProperty
sub property of: experiment description
alternative label: Primer

body side
type: AnnotationProperty
sub property of: host description
alternative label: BodySide

longitudinal seconds
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Longitudinal Seconds

leucine concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Leucine
alternative label: LEUCINE

latitudinal minute
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Latitudinal Minute

nitrate concentration
type: AnnotationProperty
alternative label: Nitrate (NO3)
alternative label: Nitrate
alternative label: nitrate_nodc_monthly
alternative label: nitrate
alternative label: N (NO3)
alternative label: nitrate_nodc_annual
alternative label: Nitrate in groundwater
sub property of: concentration of chemical substance
alternative label: Nitrate (??mol/ l)

direction
type: AnnotationProperty
sub property of: environmental description
alternative label: Direction

mud content standard deviation
type: AnnotationProperty
sub property of: environmental description
alternative label: Mud Standard Deviation

elevation
type: AnnotationProperty
sub property of: altitude or depth
alternative label: elev
alternative label: Elevation
alternative label: elevation(m)
alternative label: Geographical location (elevation)
alternative label: geographic location (elevation)

altitude or depth
type: AnnotationProperty
sub property of: metagenome sample vocabulary property

salinity
type: AnnotationProperty
alternative label: Salinity (ppt)
alternative label: CTDSAL
sub property of: concentration of chemical substance
alternative label: sal
alternative label: Salinity
alternative label: Salinity (PSU)
alternative label: Salinity at bottom

has SRP ID
type: AnnotationProperty
sub property of: SRA description

hydrogen concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: diss_hydrogen

phentoype
type: AnnotationProperty
sub property of: experiment description

turbidity
type: AnnotationProperty
sub property of: chemical description
alternative label: Turbidity
alternative label: Turbidity (NTU)

filter size
type: AnnotationProperty
sub property of: experiment description

sand content
type: AnnotationProperty
sub property of: environmental description
alternative label: sand
alternative label: Sand

solid food
type: AnnotationProperty
sub property of: host description
alternative label: SolidFood

temperature
type: AnnotationProperty
alternative label: Temperature at the time of sampling
alternative label: temp
alternative label: ctd temperature
alternative label: Temperature_avg
sub property of: environmental description
alternative label: Temperature at bottom
alternative label: Temperature
alternative label: T (oC)
alternative label: Temperature_maximum
alternative label: temperature_nodc_annual
alternative label: Temperature (deg C)
alternative label: Temperature (C)
alternative label: CTDTMP
alternative label: temperature_nodc_monthly

chromium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Chromium concentration

assigned MBGD Ortholog
type: AnnotationProperty
sub property of: ortholog

cadmium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Cadmium concentration
alternative label: total Cd concentration
alternative label: Total Cd concentration
alternative label: bioavailable Cd concentration

alpha glucosidase activity
type: AnnotationProperty
sub property of: chemical description
alternative label: alpha-glucosidase activity

amplicon16S order
type: AnnotationProperty
sub property of: genome mapping

lactate concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Concentration of lactate

sulfide concentration in sediment
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Sulfide in sediment

carbon nitrogen ratio
type: AnnotationProperty
sub property of: chemical description
alternative label: carbon/nitrogen ratio

phosphorus oxide concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: P2O5

host color
type: AnnotationProperty
sub property of: host description
alternative label: host_color

bromide concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Bromine concentration
alternative label: bromide

target gene
type: AnnotationProperty
sub property of: experiment description
alternative label: Target Gene
alternative label: Target gene
alternative label: target_gene

nitrate and nitrite concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Nitrate (NO3) and Nitrite (NO2)
alternative label: nitrite_plus_nitrate
alternative label: no2no3

time after feeding
type: AnnotationProperty
sub property of: host description
alternative label: last meal

total organic matter average
type: AnnotationProperty
sub property of: chemical description
alternative label: Total organic matter average

metagenome family
type: AnnotationProperty
sub property of: genome mapping

phosphatase average
type: AnnotationProperty
sub property of: chemical description
alternative label: Phosphatase average

assigned KO
type: AnnotationProperty
sub property of: function

oxygen concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Oxygen (O2)
alternative label: oxygen
alternative label: Oxygen
alternative label: ctd oxygen
alternative label: Oxygen (mg/L)
alternative label: CTDOXY

sample collection device or method
type: AnnotationProperty
sub property of: experiment description
alternative label: sampling method
alternative label: samp_collect_device
alternative label: Sample collection device or method

barcode sequence
type: AnnotationProperty
sub property of: experiment description
alternative label: BarcodeSequence

age
type: AnnotationProperty
sub property of: host description
alternative label: AGE
alternative label: Age
alternative label: age_in_years

cell numbers standard error
type: AnnotationProperty
sub property of: cell description

lipase standard error
type: AnnotationProperty
sub property of: chemical description

contained Ortholog
type: AnnotationProperty
sub property of: ortholog

investigation type
type: AnnotationProperty
sub property of: experiment description
alternative label: Investigation type
alternative label: investigation_type
alternative label: Investigation Type

fermentation temperature
type: AnnotationProperty
sub property of: experiment description

library size
type: AnnotationProperty
sub property of: experiment description

chimera check
type: AnnotationProperty
sub property of: experiment description

sequencing method
type: AnnotationProperty
sub property of: experiment description
alternative label: Sequencing method
alternative label: seq_meth

nickel concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Nickel concentration

wave height
type: AnnotationProperty
sub property of: environmental description
alternative label: Wave height (m)

sample storage location
type: AnnotationProperty
sub property of: experiment description

chitinase average
type: AnnotationProperty
sub property of: chemical description

contained pathway
type: AnnotationProperty
sub property of: function

petroleum hydrocarbon concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: petroleum hydrocarbon

host body temperature
type: AnnotationProperty
sub property of: host description
alternative label: host_body_temp

texture percent slit
type: AnnotationProperty
sub property of: environmental description
alternative label: Texture - percent silt

assigned genome
type: AnnotationProperty
sub property of: function

RNA type
type: AnnotationProperty
sub property of: experiment description
alternative label: rna subtype
alternative label: rna type
alternative label: rna-treatment
alternative label: rrna depletion

barium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Barium concentration

color description
type: AnnotationProperty
sub property of: environmental description
alternative label: ColorDescription

uranium concentration in groundwater
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Uranium in groundwater

conductivity
type: AnnotationProperty
sub property of: chemical description
alternative label: Specific_Conductance
alternative label: Conductivity

silicon concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Silicon (Si)
alternative label: Silicon (?mol/ l)
alternative label: Silicon concentration
alternative label: Silicon (??mol/ l)
alternative label: si

tag
type: AnnotationProperty
sub property of: SRA description

has SRR ID
type: AnnotationProperty
sub property of: SRA description

gold concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Gold concentration

sex
type: AnnotationProperty
sub property of: host description
alternative label: Sex
alternative label: GENDER
alternative label: HostSex

metagenome 16S genus
type: AnnotationProperty
sub property of: genome mapping

latitudinal degrees
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Latitudinal Degrees

library construction method
type: AnnotationProperty
sub property of: experiment description
alternative label: Library construction method

cell lineage
type: AnnotationProperty
sub property of: cell description

aminopeptidase standard error
type: AnnotationProperty
sub property of: chemical description

contained organism
type: AnnotationProperty
sub property of: function

metagenome domain
type: AnnotationProperty
sub property of: genome mapping

clay content
type: AnnotationProperty
sub property of: environmental description
alternative label: Clay (<4 micron diameter)
alternative label: clay

air temperature
type: AnnotationProperty
sub property of: environmental description
alternative label: Air Temperature
alternative label: mean annual and seasonal temperature

carbon monoxide concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: carb_monoxide

sample size for DNA extraction
type: AnnotationProperty
sub property of: experiment description
alternative label: Sample weight for DNA extraction
alternative label: sample weight for DNA extraction

uranium concentration in sediment
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Uranium in sediment

sample material processing
type: AnnotationProperty
sub property of: experiment description
alternative label: Treatment
alternative label: treatment
alternative label: treat_conditions
alternative label: Sample material processing
alternative label: SampleMethod

cells with high nucleic acid
type: AnnotationProperty
sub property of: cell description
alternative label: Cells with High Nucleic Acid

longitudinal minutes
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Longitudinal Minutes

beta glucosidase activity
type: AnnotationProperty
sub property of: chemical description
alternative label: beta-glucosidase activity

gravidity
type: AnnotationProperty
sub property of: host description
alternative label: pregnancy

scientific name
type: AnnotationProperty
sub property of: SRA description

precipitation
type: AnnotationProperty
sub property of: environmental description
alternative label: mean annual and seasonal precipitation
alternative label: Precipitation

twin type
type: AnnotationProperty
sub property of: host description

time
type: AnnotationProperty
sub property of: experiment description
alternative label: Time

pressure
type: AnnotationProperty
sub property of: environmental description
alternative label: Pressure
alternative label: ctd pressure
alternative label: Barometric Pressure (mbar)
alternative label: CTDPRS
alternative label: barometric_press
alternative label: atm_press

body habitat
type: AnnotationProperty
alternative label: sample source
alternative label: BodySite
alternative label: body_site
sub property of: host description
alternative label: body_habitat
alternative label: Body site
alternative label: Teeth samples
alternative label: BodyHabitat
alternative label: body site

beta glucosidase standard error
type: AnnotationProperty
sub property of: chemical description

redox
type: AnnotationProperty
sub property of: chemical description
alternative label: redox_state

cobalt concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Cobalt concentration

sodium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: sodium_partPerMillion
alternative label: sodium

nucleic acid amplification
type: AnnotationProperty
sub property of: experiment description
alternative label: Nucleic acid amplification

dialkyl ether concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: alkyl_diethers

antibody description
type: AnnotationProperty
sub property of: chemical description
alternative label: antibody
alternative label: antibody antibodydescription

exact match
type: AnnotationProperty
sub property of: SRA description

environmental package
type: AnnotationProperty
sub property of: SRA description
alternative label: Enviornmental package
alternative label: env_package
alternative label: Environmental package
alternative label: MIGS env_package

tissue source
type: AnnotationProperty
sub property of: experiment description

body product
type: AnnotationProperty
sub property of: host description
alternative label: Body product
alternative label: body habitat
alternative label: BodyProduct
alternative label: body_product

sample storage conditions
type: AnnotationProperty
sub property of: experiment description
alternative label: storage_condition
alternative label: Storage conditions
alternative label: storage conditions (fresh/frozen/other)

leucine aminopeptidase km
type: AnnotationProperty
sub property of: chemical description
alternative label: leucine-aminopeptidase km

sampling time period
type: AnnotationProperty
sub property of: experiment description

cell organism
type: AnnotationProperty
sub property of: cell description

sample size
type: AnnotationProperty
alternative label: Sample size
alternative label: Sample Size
alternative label: Amount of sample collected
alternative label: Amount or size of sample collected
alternative label: volume of sample
sub property of: experiment description
alternative label: samp_size
alternative label: volume_filtered
alternative label: tot_mass
alternative label: amount or size of sample collected

antibiotic regimen
type: AnnotationProperty
sub property of: host description

acetate concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Concentration of acetate
alternative label: Acetate

urea concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Urea (??mol N/ l)
alternative label: Urea (?mol N/ l)

host taxon ID
type: AnnotationProperty
alternative label: Host taxID
alternative label: host taxid
alternative label: host tax-id
alternative label: host_taxid
alternative label: HostTaxonId
alternative label: HOST_TAXID
alternative label: host_taxon_id
sub property of: host description
alternative label: host taxon id
alternative label: taxon id
alternative label: host_taxon_ID
alternative label: taxon_id

leucine aminopeptidase activity
type: AnnotationProperty
sub property of: chemical description
alternative label: leucine-aminopeptidase activity

cell numbers
type: AnnotationProperty
sub property of: cell description
alternative label: Cells

ammonium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: N (NH4)
alternative label: nh4
alternative label: Ammonium
alternative label: ammonium
alternative label: Ammonium (NH4)

sequence quality check
type: AnnotationProperty
sub property of: experiment description

amplicon16S domain
type: AnnotationProperty
sub property of: genome mapping

ethanol concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Concentration of ethanol

metagenome 16S phylum
type: AnnotationProperty
sub property of: genome mapping

environment
type: AnnotationProperty
alternative label: Environment (biome)
alternative label: Environment (material)
alternative label: Environment (Feature)
alternative label: Environment (Biome)
alternative label: lter_station_name
alternative label: env_matter
alternative label: env_feature_term
alternative label: Site_description--Other
alternative label: Isolation source
alternative label: field_notes
alternative label: microbial_mat
alternative label: Habitat
alternative label: env_biome
alternative label: Common name
alternative label: env_matter_term
alternative label: envo_material
alternative label: env_feature
alternative label: feature
alternative label: Material
alternative label: habitat
alternative label: Environment (featurel)
alternative label: Material Type
alternative label: biome
alternative label: environment (biome)
alternative label: sample type
alternative label: environment (feature)
alternative label: common_name
alternative label: Type_of_Sample
alternative label: strains
alternative label: site
alternative label: material
alternative label: envo_feature
alternative label: environment (material)
alternative label: Sample type
alternative label: isolation_source
alternative label: Environment
alternative label: envo_biome
sub property of: environmental description
alternative label: environmental_sample
alternative label: Environment (feature)
alternative label: env_biome_term
alternative label: Habitat Type

sample collection date
type: AnnotationProperty
alternative label: Sample collection_date
alternative label: collection_date
alternative label: Collection date
alternative label: Sampling_date
sub property of: experiment description
alternative label: sampling date
alternative label: SampleDate
alternative label: Colection Date
alternative label: collection date
alternative label: Time of sample collection
alternative label: Collection Date

urine collection method
type: AnnotationProperty
sub property of: experiment description
alternative label: urine/collection method

current vegetation
type: AnnotationProperty
sub property of: environmental description
alternative label: cur_vegetation

size fraction
type: AnnotationProperty
sub property of: experiment description
alternative label: Size Fraction (um)

phosphorus concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Phosphorus concentration
alternative label: totp
alternative label: tot_phosp
alternative label: Total Phosphorus
alternative label: total_disssolved_phosphorus
alternative label: Tot-P
alternative label: tot_diss_phosp

COD
type: AnnotationProperty
sub property of: chemical description
alternative label: Chemical oxygen demand (g/kg)

nitrogen concentration
type: AnnotationProperty
alternative label: total_dissolved_nitrogen
alternative label: tot_nitro
alternative label: Total dissolved nitrogen (?mol N/ l)
alternative label: total nitrogen
alternative label: nitrogen
alternative label: total organic nitrogen
alternative label: Total dissolved nitrogen (??mol N/ l)
alternative label: total_nitrogen
alternative label: tot_diss_nitro
alternative label: Tot-N
alternative label: Total Nitrogen
alternative label: total N
sub property of: concentration of chemical substance
alternative label: particulate_nitrogen
alternative label: totn

plant body site
type: AnnotationProperty
sub property of: host description
alternative label: tissue

taxon ID
type: AnnotationProperty
sub property of: SRA description

metagenome 16S class
type: AnnotationProperty
sub property of: genome mapping

sample day
type: AnnotationProperty
sub property of: experiment description
alternative label: Sample Day

transparency
type: AnnotationProperty
sub property of: chemical description
alternative label: Transparency

longitudinal degrees
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Longitudinal Degrees

host subject ID
type: AnnotationProperty
sub property of: host description
alternative label: host_subject_id

altitude
type: AnnotationProperty
sub property of: altitude or depth
alternative label: alt_elev
alternative label: alt

depth start
type: AnnotationProperty
sub property of: altitude or depth
alternative label: Depth_start
alternative label: depth_start
alternative label: sediment_depth_start

dissolved inorganic carbon concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: dissolved inorganic carbon
alternative label: Dissolved Inorganic Carbon

sulfide concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Sulfide (S2)

pcr primer
type: AnnotationProperty
sub property of: experiment description
alternative label: pcr primers
alternative label: PCR primers

library vector
type: AnnotationProperty
sub property of: experiment description

sampling time
type: AnnotationProperty
sub property of: experiment description
alternative label: Sampling Time
alternative label: Sampling_time

mud content average
type: AnnotationProperty
sub property of: environmental description
alternative label: Mud Average

has SRA ID
type: AnnotationProperty
sub property of: SRA description

target subfragment
type: AnnotationProperty
sub property of: experiment description
alternative label: Target subfragment

data type
type: AnnotationProperty
sub property of: experiment description
alternative label: datatype description
alternative label: datatype

library screening strategy
type: AnnotationProperty
sub property of: experiment description

sample description
type: AnnotationProperty
sub property of: SRA description

chemical administration
type: AnnotationProperty
sub property of: host description
alternative label: chem_administration

carbon concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: total carbon
alternative label: part_carb
alternative label: particulate_carbon

total bases
type: AnnotationProperty
sub property of: experiment description
alternative label: Total bases
alternative label: bases

sand content average
type: AnnotationProperty
sub property of: environmental description
alternative label: Sand Average

selenium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Selenium concentration

multiplex identifier
type: AnnotationProperty
sub property of: experiment description
alternative label: multiplex identifiers
alternative label: Multiplex identifiers

texture percent clay
type: AnnotationProperty
sub property of: environmental description
alternative label: Texture - percent clay

water quantity
type: AnnotationProperty
sub property of: chemical description
alternative label: Total vol. H2O filtered (L)

disease state
type: AnnotationProperty
alternative label: gastrointestinal tract disorder
alternative label: disease stage
alternative label: disease status
alternative label: Disease status
sub property of: host description
alternative label: condition
alternative label: health or disease status of specific host at time of collection
alternative label: Disease_State
alternative label: disease_stat

chloride concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: chloride
alternative label: Chloride

nitrite concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: nitrite
alternative label: Nitrite (?mol/ l)
alternative label: Nitrite (NO2)
alternative label: Nitrite (??mol/ l)

nucleic acid extraction
type: AnnotationProperty
sub property of: experiment description
alternative label: nucleic acid extraction method
alternative label: Nucleic acid extraction

relationship to oxygen
type: AnnotationProperty
sub property of: chemical description
alternative label: oxy_stat_samp
alternative label: rel_to_oxygen

metagenome 16S order
type: AnnotationProperty
sub property of: genome mapping

altitude or elevation
type: AnnotationProperty
sub property of: altitude or depth
alternative label: geographic location (altitude/elevation)
alternative label: Geographic location (altitude/elevation)

calcium carbonate content average
type: AnnotationProperty
sub property of: chemical description
alternative label: Calcium carbonate (CaCO3) content average

calcium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: calcium_partPerMillion
alternative label: calcium

common name
type: AnnotationProperty
sub property of: SRA description

hydrogen sulfide concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Hydrogen Sulfide (H2S)

amplicon16S phylum
type: AnnotationProperty
sub property of: genome mapping

redox potential
type: AnnotationProperty
sub property of: chemical description
alternative label: redox

apparent oxygen utilization
type: AnnotationProperty
sub property of: chemical description
alternative label: Apparent Oxygen Utilization

project name
type: AnnotationProperty
sub property of: SRA description
alternative label: project_name

chlorine concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Chlorine concentration

chip antibody vendor
type: AnnotationProperty
sub property of: chemical description

climate
type: AnnotationProperty
sub property of: environmental description
alternative label: climate environment

sample storage temperature
type: AnnotationProperty
sub property of: experiment description
alternative label: samp_store_temp
alternative label: Sample storage condition
alternative label: Storage conditions (fresh/frozen/other)

potential sulphate reduction
type: AnnotationProperty
sub property of: chemical description
alternative label: Potential sulphate reduction

pooling of DNA extracts
type: AnnotationProperty
sub property of: experiment description
alternative label: pooling of DNA extracts (if done)
alternative label: Pooling of DNA extracts (if done)

library reads sequenced
type: AnnotationProperty
sub property of: experiment description
alternative label: Library reads sequenced

aminopeptidase average
type: AnnotationProperty
sub property of: chemical description

organic carbon concentration
type: AnnotationProperty
alternative label: dissolved organic carbon
alternative label: dissolved_organic_carbon
alternative label: Dissolved Organic Carbon
alternative label: org_carb
alternative label: part_org_carv
alternative label: tot_org_carb
alternative label: part_org_carb
alternative label: total organic carbon
alternative label: organic carbon
alternative label: diss_org_carb [estimated value]
alternative label: diss_org_carb
sub property of: concentration of chemical substance

assigned pathway
type: AnnotationProperty
sub property of: function

allergy status
type: AnnotationProperty
sub property of: host description
alternative label: Allergy status

host condition
type: AnnotationProperty
sub property of: host description

chlorophyll concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Chl
alternative label: Chlorophyll
alternative label: Extracted chlorophyll
alternative label: Sediment Chlorophyll a average
alternative label: chlorophyll

life stage
type: AnnotationProperty
sub property of: host description
alternative label: dev_stage

metagenome class
type: AnnotationProperty
sub property of: genome mapping

ethnicity
type: AnnotationProperty
sub property of: host description
alternative label: ethnic_group
alternative label: IHMC ethnicity

wastewater type
type: AnnotationProperty
sub property of: experiment description
alternative label: wastewater_type

amplification
type: AnnotationProperty
sub property of: experiment description
alternative label: Amplification

height
type: AnnotationProperty
sub property of: host description

alkaline phospatase vmax
type: AnnotationProperty
sub property of: chemical description

chlorophyll A concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: chlorophyll_a
alternative label: Chlorophyll_a
alternative label: chla

arsenic concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Arsenic concentration

sample title
type: AnnotationProperty
sub property of: SRA description

phosphatase standard error
type: AnnotationProperty
sub property of: chemical description

host name
type: AnnotationProperty
alternative label: host_species
alternative label: domain
alternative label: HostSpecies
alternative label: specific host
alternative label: host_organism
alternative label: host common name
alternative label: host
alternative label: Species
alternative label: host_common_name
alternative label: Host
alternative label: Host common name
alternative label: Host (scientific name)
sub property of: host description
alternative label: host species

contained KO
type: AnnotationProperty
sub property of: function

zirconium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Zirconium concentration
alternative label: Zinc concentration
alternative label: total Zn concentration
alternative label: bioavailable Zn concentration

soil type
type: AnnotationProperty
sub property of: environmental description
alternative label: Soil type
alternative label: Soil Type

metagenome order
type: AnnotationProperty
sub property of: genome mapping

bivalent iron total iron ratio
type: AnnotationProperty
sub property of: chemical description
alternative label: Fe(II)/ Total Fe

cell type
type: AnnotationProperty
sub property of: cell description

strontium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Strontium concentration

leucine aminopeptidase vmax
type: AnnotationProperty
sub property of: chemical description
alternative label: leucine-aminopeptidase vmax

diet
type: AnnotationProperty
sub property of: host description

metagenome phylum
type: AnnotationProperty
sub property of: genome mapping

substrate
type: AnnotationProperty
sub property of: experiment description

metagenome genus
type: AnnotationProperty
sub property of: genome mapping

has PubMed ID
type: AnnotationProperty
sub property of: SRA description

family relationship
type: AnnotationProperty
sub property of: host description
alternative label: family_relationship

fructose concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Concentration of fructose

mannitol concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Concentration of mannitol

magnesium concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: magnesium
alternative label: magnesium_partPerMillion

potential acetate methanogenesis
type: AnnotationProperty
sub property of: chemical description
alternative label: Potential acetate methanogenesis

alkaline phospatase activity
type: AnnotationProperty
sub property of: chemical description

carotenoids concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: carotenoids

depth end
type: AnnotationProperty
sub property of: altitude or depth
alternative label: depth_end
alternative label: Depth_end
alternative label: sediment_depth_end

archaeal production
type: AnnotationProperty
sub property of: chemical description
alternative label: Archaeal Production

current land use
type: AnnotationProperty
sub property of: environmental description
alternative label: current vegetation
alternative label: cur_land_use
alternative label: Current land use

organic nitrogen concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: diss_org_nitro
alternative label: org_nitro
alternative label: Dissolved Organic Nitrogen
alternative label: part_org_nitro

latitude
type: AnnotationProperty
sub property of: latitude and longitude
alternative label: Geographic location (latitude)
alternative label: lat
alternative label: Geographic location (Latitude)
alternative label: geographic location (latitude)
alternative label: Latitude

cell sex
type: AnnotationProperty
sub property of: cell description

silicate concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: silicate
alternative label: Silicate
alternative label: Silicate (SO4)

depth
type: AnnotationProperty
alternative label: Geographic location (depth)
sub property of: altitude or depth
alternative label: Sample Depth (ft)
alternative label: string_depth
alternative label: geographical location (depth)
alternative label: Water Depth (ft)
alternative label: Core depth (1-2 cm), cold sediment
alternative label: tot_depth_water_col
alternative label: Core depth (1-2 cm), orange mat
alternative label: geographic location (depth)
alternative label: depth_category
alternative label: absolute_depth_beta
alternative label: Sample Depth (m)
alternative label: Depth
alternative label: Geographical location (Depth)
alternative label: depth(m)
alternative label: Water Depth (m)

humidity
type: AnnotationProperty
sub property of: environmental description
alternative label: Humidity

nearly located
type: AnnotationProperty
sub property of: SRA description

bishomohopanol concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: bishomohopanol

sucrose concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Concentration of sucrose

has SRX ID
type: AnnotationProperty
sub property of: SRA description

methane concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: methane
alternative label: Methane (CH4)

treatment description
type: AnnotationProperty
sub property of: experiment description
alternative label: Treatment

manganese concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Manganese concentration
alternative label: Manganese (Mn)

biomass
type: AnnotationProperty
sub property of: experiment description

lake area
type: AnnotationProperty
sub property of: environmental description

population
type: AnnotationProperty
sub property of: host description

value
type: AnnotationProperty
sub property of: SRA description

glucose concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Concentration of glucose

period of fermentation
type: AnnotationProperty
sub property of: experiment description

sulfur concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: S (ppt)
alternative label: Sulfur concentration

breast milk
type: AnnotationProperty
sub property of: host description
alternative label: BreastMilk

sulfide concentration in groundwater
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Sulfide in groundwater

hand
type: AnnotationProperty
sub property of: host description
alternative label: hand (R/L)

copper concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: Copper concentration

chip antibody
type: AnnotationProperty
sub property of: chemical description

metagenome 16S domain
type: AnnotationProperty
sub property of: genome mapping

sample ID
type: AnnotationProperty
sub property of: experiment description
alternative label: sample_ID

lab description
type: AnnotationProperty
sub property of: experiment description
alternative label: lab

pathway count
type: AnnotationProperty
sub property of: function

thymidine uptake
type: AnnotationProperty
sub property of: chemical description
alternative label: Thymidine uptake

sample storage duration
type: AnnotationProperty
sub property of: experiment description
alternative label: Sample storage duration

sulfate concentration
type: AnnotationProperty
sub property of: concentration of chemical substance
alternative label: sulfate
alternative label: Sulfate in groundwater
alternative label: Sulfate (SO4)

journal title
type: AnnotationProperty
sub property of: SRA description

sediment phaeopigments average
type: AnnotationProperty
sub property of: experiment description
alternative label: Sediment Phaeopigments average

adapters
type: AnnotationProperty
sub property of: experiment description
alternative label: Adapters

general weather
type: AnnotationProperty
sub property of: environmental description
alternative label: General Weather

irradiance
type: AnnotationProperty
sub property of: chemical description
alternative label: par_irradiance
alternative label: Irradiance

silicagel membrane extraction
type: AnnotationProperty
sub property of: experiment description
alternative label: silica-gel membrane extraction