MCCV: Microbial Culture Collection Vocabulary
type: Ontology
contributor: Shinobu Okamoto
contributor: Hiroshi Mori
creator: Shuichi Kawashima
language: English and Japanese
imports: http://purl.org/dc/elements/1.1/
version info: Version 0.94 beta
definition: Structured controlled vocabulary for describing meta information of microbial calture collection maintained in biological research centers

mccv resource:genid1
type: Restriction
cardinality: 1
on property: Date of isolation

Culture
type: Class
label: 菌株 @ja
subclass of: Strain
subclass of: mccv resource:genid1
definition: Culture

Strain
type: Class
comment: 微生物の特定の株。個々の実験室で培養されている微生物株の上位概念としての株 @ja
subclass of: Species
definition: Strain

Species
type: Class

culture collection number
type: FunctionalProperty
type: DatatypeProperty
comment: This property is designed to serve as an equivalent to the term 'Strain Number' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: Culture
label: 菌株番号 @ja
range: string
sub property of: identifier
definition: An identifier of a culture maintained in each BRC

species name
type: DatatypeProperty
domain: mccv resource:genid4
label: 生物種名 @ja
range: string
definition: species name

qualified species name
type: DatatypeProperty
comment: This property is designed to serve as an equivalent to the term 'Name' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid7
label: 生物種名（著者含） @ja
range: string
definition: qualified species name

growth temperature
type: DatatypeProperty
domain: mccv resource:genid10
label: 生育温度 @ja
range: float
definition: Growth temperature
preferred label: Growth temperature

optimal growth temperature
type: DatatypeProperty
comment: This property is designed to serve as an equivalent to the term 'Optimum Temperature for Growth' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid13
label: 至適生育温度 @ja
range: float
sub property of: growth temperature
definition: Optimal growth temperature

minimal growth temperature
type: DatatypeProperty
comment: This property is designed to serve as an equivalent to the term 'Minimum Temperature for Growth' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid16
label: 最低生育温度 @ja
range: float
sub property of: growth temperature
definition: Minimal growth temperature

maximal growth temperature
type: DatatypeProperty
comment: This property is designed to serve as an equivalent to the term 'Maximum Temperature for Growth' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid19
label: 最高生育温度 @ja
range: float
sub property of: growth temperature
definition: Maximal growth temperature

is type strain
type: FunctionalProperty
type: DatatypeProperty
domain: mccv resource:genid22
label: 基準株 @ja
range: boolean

growth medium
type: ObjectProperty
comment: This property is designed to serve as an equivalent to the term 'Medium' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid25
label: 培養培地 @ja
range: Medium
definition: growth medium

rehydration fluid
type: ObjectProperty
domain: mccv resource:genid28
label: 復元液 @ja
range: gmo
definition: rehydration fluid

is related to taxonomy
type: ObjectProperty
domain: mccv resource:genid31
label: 関連付けられるタクソノミー @ja
definition: is related to taxonomy

is related to taxonomy by DB link
type: ObjectProperty
domain: mccv resource:genid34
label: 他データベースのリンク情報により関連付けられるタクソノミー @ja
sub property of: is related to taxonomy
definition: is related to taxonomy by DB link

is related to taxonomy by sequence
type: ObjectProperty
domain: mccv resource:genid37
label: 配列検索により関連付けられるタクソノミー @ja
sub property of: is related to taxonomy
definition: is related to taxonomy by sequence

is related to taxonomy by strain name
type: ObjectProperty
domain: mccv resource:genid40
label: 生物種名の類似性で関連付けられるタクソノミー @ja
sub property of: is related to taxonomy
definition: is related to taxonomy by strain name

other culture collection Information
type: ObjectProperty
domain: Culture
label: 他機関での菌株情報 @ja
definition: other culture collection Information

other culture collection URI
type: ObjectProperty
label: 他機関での菌株URI @ja
range: Culture
sub property of: other culture collection Information
definition: other culture collection URI

other culture collection number
type: DatatypeProperty
comment: This property is designed to serve as an equivalent to the term 'Other Collection Numbers' in the Global Catalogue of Microorganisms Minimum Data Sets Description
label: 他機関での菌株番号 @ja
range: string
sub property of: other culture collection Information
definition: other culture collection number

history
type: DatatypeProperty
type: ObjectProperty
comment: This property is designed to serve as an equivalent to the term 'History of Deposit' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: Culture
label: 来歴 @ja
range: string
definition: history

isolated from
type: ObjectProperty
comment: This property is designed to serve as an equivalent to the term 'Isolated From' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid43
range: meo
definition: Habitat information of a strain. This property is designed to serve as an equivalent to the term 'Isolated From' in the Global Catalogue of Microorganisms Minimum Data Sets Description

isolation source description
type: ObjectProperty
domain: mccv resource:genid46
range: Resource
definition: isolation source description

isolation source country
type: ObjectProperty
domain: mccv resource:genid49
range: Resource
sub property of: isolation source description
definition: isolation source country

isolation source place
type: ObjectProperty
domain: mccv resource:genid52
range: Resource
sub property of: isolation source description
definition: isolation source place

application
type: DatatypeProperty
comment: This property is designed to serve as an equivalent to the term 'Application' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid55
range: string
preferred label: Application

biosafty level
type: DatatypeProperty
domain: mccv resource:genid58
range: string
definition: Biosafty level

animal quarantine number
type: DatatypeProperty
domain: mccv resource:genid61
label: 動物検疫番号 @ja
range: string
definition: Animal quarantine number
preferred label: Animal quarantine number

plant quarantine mumber
type: DatatypeProperty
domain: mccv resource:genid64
label: 植物検疫番号 @ja
range: string
definition: Plant quarantine mumber

herbarium number
type: DatatypeProperty
domain: mccv resource:genid67
label: 植物標本番号 @ja
range: string
definition: Herbarium number

organism category by BRC
type: FunctionalProperty
type: ObjectProperty
comment: This property is designed to serve as an equivalent to the term 'Organism Type' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid70
range: OrganismCategoryByBRCInJapan
definition: organism category by BRC

OrganismCategoryByBRCInJapan
type: Class
comment: The organism category used in NBRC and JCM
comment: NBRCとJCMで使われている生物カテゴリー分類 @ja
label: 生物カテゴリー分類

Bacteria
type: Class
comment: An organism category used in NBRC and JCM
subclass of: OrganismCategoryByBRCInJapan
definition: Bacteria as an organism category used in NBRC and JCM

Archaea
type: Class
comment: An organism category used in NBRC and JCM
subclass of: OrganismCategoryByBRCInJapan
definition: Archaea as an organism category used in NBRC and JCM

Fungi
type: Class
comment: An organism category used in NBRC and JCM
subclass of: OrganismCategoryByBRCInJapan
definition: Fungi as an organism category used in NBRC and JCM

Yeasts
type: Class
comment: An organism category used in NBRC and JCM
subclass of: OrganismCategoryByBRCInJapan
definition: Yeasts as an organism category used in NBRC and JCM

Algae
type: Class
comment: An organism category used in NBRC and JCM
subclass of: OrganismCategoryByBRCInJapan
definition: Algae as an organism category used in NBRC and JCM

Phages
type: Class
comment: An organism category used in NBRC and JCM
subclass of: OrganismCategoryByBRCInJapan
definition: Phages as an organism category used in NBRC and JCM

isApproved
type: ObjectProperty
comment: ture for approved species name, false for unapproved species name
domain: mccv resource:genid73
range: boolean

reference number
type: DatatypeProperty
domain: mccv resource:genid76
label: 文献番号 @ja
range: string
definition: reference number

DNA/RNA sequence for strain identification
type: DatatypeProperty
domain: mccv resource:genid79
range: string
definition: DNA/RNA sequence for strain identification

growth pH
type: DatatypeProperty
domain: mccv resource:genid82
label: 生育pH @ja
range: float
definition: Growth pH on culture medium

optimal growth pH
type: DatatypeProperty
domain: mccv resource:genid85
label: 至適生育pH @ja
range: float
sub property of: growth pH
definition: Optimal growth pH on culture medium

maximum growth pH
type: DatatypeProperty
domain: mccv resource:genid88
label: 最大生育pH @ja
range: float
sub property of: growth pH
definition: Maximum growth pH on culture medium
preferred label: Date of isolation

minimum growth pH
type: DatatypeProperty
domain: mccv resource:genid91
label: 最小生育pH @ja
range: float
sub property of: growth pH
definition: Minimum growth pH on growth medium
preferred label: Date of isolation

Attribution
type: Class

attribution
type: ObjectProperty

Date of isolation
type: DatatypeProperty
domain: Culture
definition: Date of isolation

is related to taxonomy by NCBI taxonomy database
type: ObjectProperty
label: NCBI Taxonomyデータベースのリンク情報により関連付けられるタクソノミー @ja
range: mccv resource:genid94
sub property of: is related to taxonomy by DB link

is related to taxonomy by StrainInfo database
type: ObjectProperty
domain: mccv resource:genid97
label: StrainInfoデータベースのリンク情報により関連付けられるタクソノミー @ja
sub property of: is related to taxonomy by DB link

isolation source host
type: ObjectProperty
domain: mccv resource:genid100
range: Resource
sub property of: isolation source description
definition: isolation source host

isolation source anatomy
type: ObjectProperty
domain: mccv resource:genid103
range: Resource
sub property of: isolation source description
definition: isolation source anatomy

isolation source environment
type: ObjectProperty
domain: mccv resource:genid106
range: Resource
sub property of: isolation source description
definition: isolation source environment

hostCondition
type: ObjectProperty
comment: Description about the health condition of the host from which the strain was isolated
domain: Resource
range: Resource
definition: host condition

Date of isolation
type: DatatypeProperty
domain: mccv resource:genid109
range: string
sub property of: date
definition: Date of isolation

Date of collection
type: DatatypeProperty
domain: mccv resource:genid112
range: string
sub property of: date
definition: Date of collection

Status
type: ObjectProperty
comment: This property is designed to serve as an equivalent to the term 'Status' in the Global Catalogue of Microorganisms Minimum Data Sets Description
domain: mccv resource:genid115
range: type
definition: Nomenclatural status of the strain

is a species
type: ObjectProperty
comment: A taxonomy ID of a species is supposed to be the range of this property.
domain: mccv resource:genid118
inverse of: has a strain
definition: is a species

has a strain
type: ObjectProperty
comment: The taxonomy ID of a species is supposed to be a domain of this property.
domain: mccv resource:genid121
inverse of: is a species
definition: has a strain

has culture
type: ObjectProperty
domain: Strain
range: Culture

is a strain
type: ObjectProperty
domain: Culture
range: Strain