lsr:bcteo
type: Ontology
obo vocabulary:format-version: 1.1
data version [obo_vocabulary:data-version]: releases/2013-08
obo vocabulary:auto-generated-by: OBO-Edit 2.2
obo vocabulary:default-namespace: bcteo

data version [obo_vocabulary:data-version]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: data-version
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: data version
type: DatatypeProperty

Cell seeding [id:0000000]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000000
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell seeding
type: Class
description: Phase in which cells are loaded onto a carrier, substrate or threedimensional material. []
subclass of: In vitro study [id:0000023]

In vitro study [id:0000023]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000023
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: In vitro study
type: Class
description: A study design that is done in a test environment, such as a culture dish, using an established cell culture procedure. []
obo vocabulary:related synonym: In vitro study
subclass of: Experiment [id:0000021]

Cell expansion [id:0000001]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000001
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell expansion
type: Class
description: Experimental phase aimed to amplify the number of cell in culture, through their doubling. []
subclass of: In vitro study [id:0000023]

Scaffold property [id:0000002]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000002
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Scaffold property
type: Class
description: Property that is typical of a specific scaffold, depending not only on the material but even on the shape, the size, the structure etc. []
characterizes [obo_vocabulary:characterizes]: Biomaterial [id:0000035]
subclass of: obo vocabulary:Entity

characterizes [obo_vocabulary:characterizes]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: characterizes
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: characterizes
type: ObjectProperty

Biomaterial [id:0000035]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000035
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Biomaterial
type: Class
description: A non-drug substance suitable for inclusion in systems which augment or replace the function of bodily tissues or organs. []
intervenes_in [obo_vocabulary:intervenes_in]: Cell seeding [id:0000000]
intervenes_in [obo_vocabulary:intervenes_in]: Implant [id:0000028]
subclass of: obo vocabulary:Entity

Cell [id:0000003]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000003
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell
type: Class
obo vocabulary:namespace: caro
description: Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. [CARO:0000013]
intervenes_in [obo_vocabulary:intervenes_in]: Cell seeding [id:0000000]
intervenes_in [obo_vocabulary:intervenes_in]: Cell expansion [id:0000001]
intervenes_in [obo_vocabulary:intervenes_in]: Implant [id:0000028]
obo vocabulary:part of: Primary cell culture [id:0000008]
obo vocabulary:part of: Cell line [id:0000020]
subclass of: obo vocabulary:Entity

intervenes_in [obo_vocabulary:intervenes_in]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: intervenes_in
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: intervenes_in
type: ObjectProperty

Implant [id:0000028]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000028
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Implant
type: Class
description: A medical device manufactured to replace a missing biological structure, support a damaged biological structure, or enhance an existing biological structure. []
subclass of: In vivo study [id:0000027]

Primary cell culture [id:0000008]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000008
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Primary cell culture
type: Class
obo vocabulary:namespace: obi
description: Cell culture where the cells derive from a fresh tissue source. [OBI:0100061]
derives_from [obo_vocabulary:derives_from]: Isolated tissue [id:0000104]
subclass of: obo vocabulary:Entity

Cell line [id:0000020]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000020
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell line
type: Class
obo vocabulary:namespace: ero
description: Population of cells cultured in vitro that are descended through one or more generations (and possible sub-cultures) from a single primary culture which was originally derived from part of an organism. The cells of such a population share common characteristics. [ERO:0000009]
derives_from [obo_vocabulary:derives_from]: Isolated tissue [id:0000104]
subclass of: obo vocabulary:Entity

Mechanical property [id:0000004]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000004
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mechanical property
type: Class
description: Property that reveals the reaction, either elastic or plastic, of a metal to an applied stress. Tensile strength, yield strength, elongation, reduction of area, hardness, impact strength, and bend ability are examples of mechanical properties. []
subclass of: Scaffold property [id:0000002]

Cell expansion environment [id:0000005]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000005
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell expansion environment
type: Class
description: Experimental environment where cells are expanded. It describes all the biological parameters related to cell expansion. []
intervenes_in [obo_vocabulary:intervenes_in]: Cell expansion [id:0000001]
subclass of: obo vocabulary:Entity

Morphological property [id:0000006]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000006
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Morphological property
type: Class
description: Property of materials, biological tissues or other objects, and their specific structural features. It can regard aspects of the outward appearance (shape, structure, pattern) as well as the form and structure of the internal parts. []
subclass of: Scaffold property [id:0000002]

Neoformed tissue [id:0000007]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000007
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Neoformed tissue
type: Class
description: Tissue grown on substitute material. []
subclass of: Tissue [id:0000102]
derives_from [obo_vocabulary:derives_from]: Implant [id:0000028]
intervenes_in [obo_vocabulary:intervenes_in]: Cellular response evaluation [id:0000033]

Tissue [id:0000102]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000102
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Tissue
type: Class
obo vocabulary:namespace: caro
description: Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. [CARO:0000043]
subclass of: obo vocabulary:Entity

derives_from [obo_vocabulary:derives_from]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: derives_from
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: derives_from
type: ObjectProperty

Cellular response evaluation [id:0000033]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000033
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cellular response evaluation
type: Class
description: Eveluation of the biochemical, molecular, mechanical events activated within the cell when cultured on a material. The nature of these intracellular events differs according to the type of cell and the considered material. []
subclass of: obo vocabulary:Entity

Isolated tissue [id:0000104]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000104
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Isolated tissue
type: Class
description: Tissue that has been extracted from the organism. []
subclass of: Tissue [id:0000102]

Density [id:0000009]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000009
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Density
type: Class
description: Mass per unit volume. []
x opb [obo_vocabulary:x-opb]: opb:00546
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Compression test [id:0000137]
derives_from [obo_vocabulary:derives_from]: Tensile test [id:0000138]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]
derives_from [obo_vocabulary:derives_from]: Torsion test [id:0000140]

x opb [obo_vocabulary:x-opb]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: x-opb
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: x opb
type: ObjectProperty

opb:00546
bio2rdf vocabulary:namespace: opb
bio2rdf vocabulary:identifier: 00546
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/opb/00546
type: opb resource [opb_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Compression test [id:0000137]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000137
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Compression test
type: Class
description: Mechanical test where balanced inward (pushing) forces are applied to different points of a material or structure. Applied forces have no net sum or torque directed. By inducing compression, mechanical properties such as compressive strength or modulus of elasticity, can be measured. []
subclass of: Dynamic Mechanical Analysis [id:0000061]

Tensile test [id:0000138]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000138
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Tensile test
type: Class
description: Materials science test in which a sample is subjected to a controlled tension until failure. Properties that are directly measured via a tensile test are ultimate tensile strength, maximum elongation and reduction in area. From these measurements the following properties can also be determined: Young's modulus, Poisson's ratio, yield strength, and strain-hardening characteristics []
subclass of: Dynamic Mechanical Analysis [id:0000061]

Fracture test [id:0000139]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000139
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Fracture test
type: Class
description: Used to define a material's ability to resist deformation under load. []
subclass of: Dynamic Mechanical Analysis [id:0000061]

Torsion test [id:0000140]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000140
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Torsion test
type: Class
description: Mechanical test where an applied torque generate a twisting of the material. []
subclass of: Dynamic Mechanical Analysis [id:0000061]

Young\'s module [id:0000010]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000010
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Young\'s module
type: Class
description: Measure of the stiffness of an elastic material and is a quantity used to characterize materials. It is defined as the ratio of the stress along an axis over the strain along that axis in the range of stress in which Hooke's law holds. []
obo vocabulary:related synonym: Elastic modulus
obo vocabulary:related synonym: Tensile modulus
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Compression test [id:0000137]
derives_from [obo_vocabulary:derives_from]: Tensile test [id:0000138]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]
derives_from [obo_vocabulary:derives_from]: Torsion test [id:0000140]

Pore shape [id:0000011]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000011
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Pore shape
type: Class
description: The shape of the pores in the material. []
characterizes [obo_vocabulary:characterizes]: Porosity [id:0000017]
subclass of: obo vocabulary:Entity

Porosity [id:0000017]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000017
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Porosity
type: Class
description: Measure of the void (i.e., empty) spaces in a material, and is a fraction of the volume of voids over the total volume, between 0 and 1, or as a percentage between 0 and 100%. []
subclass of: Morphological property [id:0000006]

Ovis aries [id:0000012]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000012
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Ovis aries
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:9940
subclass of: Donor [id:0000082]
subclass of: Host [id:0000083]

taxonomy:9940
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 9940
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/9940
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Donor [id:0000082]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000082
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Donor
type: Class
obo vocabulary:namespace: obi
description: A role which inheres in an organism or part thereof from which any part including cell, organ or tissue is removed with the intention that the donated part will be placed into another organism and/or cultured in vitro. [OBI:1110087]
subclass of: Organism [id:0000075]

Host [id:0000083]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000083
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Host
type: Class
description: Organism for the implant. []
subclass of: Organism [id:0000075]
intervenes_in [obo_vocabulary:intervenes_in]: Implant [id:0000028]

Total porosity [id:0000013]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000013
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Total porosity
type: Class
description: Percentage of pore space. []
characterizes [obo_vocabulary:characterizes]: Porosity [id:0000017]
subclass of: obo vocabulary:Entity

Disk [id:0000014]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000014
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Disk
type: Class
description: A round, flattened, platelike structure. []
subclass of: Shape [id:0000026]

Shape [id:0000026]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000026
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Shape
type: Class
description: Geometrical description of the part of that space occupied by the object, as determined by its external boundary, abstracting from location and orientation in space, size, and other properties such as colour, content, and material composition. []
subclass of: Morphological property [id:0000006]

Resilience [id:0000015]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000015
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Resilience
type: Class
description: Ability of a material to absorb energy when it is deformed elastically, and release that energy upon unloading. []
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Compression test [id:0000137]
derives_from [obo_vocabulary:derives_from]: Tensile test [id:0000138]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]
derives_from [obo_vocabulary:derives_from]: Torsion test [id:0000140]

Cube [id:0000016]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000016
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cube
type: Class
description: A symmetrical three-dimensional shape, either solid or hollow, contained by six equal squares. []
subclass of: Shape [id:0000026]

Culture medium [id:0000018]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000018
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Culture medium
type: Class
description: Liquid or gel designed to support the growth of microorganisms or cells. There are different types of media for growing different types of cells. []
subclass of: Cell culture environment [id:0000247]

Cell culture environment [id:0000247]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000247
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell culture environment
type: Class
description: Experimental environment where cells are cultured onto nthe material. It describes all the biological parameters related to cell culture. []
intervenes_in [obo_vocabulary:intervenes_in]: Cell seeding [id:0000000]
subclass of: obo vocabulary:Entity

Expansion medium [id:0000019]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000019
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Expansion medium
type: Class
description: Liquid or gel designed to expand cells. There are different types of media for culture different types of cells. []
subclass of: Cell expansion environment [id:0000005]

Experiment [id:0000021]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000021
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Experiment
type: Class
description: A methodical procedure carried out with the goal of verifying, falsifying, or establishing the validity of a hypothesis. []
subclass of: obo vocabulary:Entity

Size [id:0000022]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000022
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Size
type: Class
description: The magnitude of a quantity, such as length or mass, relative to a unit of measurement. []
subclass of: Morphological property [id:0000006]

Weight [id:0000024]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000024
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Weight
type: Class
obo vocabulary:namespace: pato
description: A physical quality inhering in a bearer that has mass near a gravitational body. [PATO:0000128]
characterizes [obo_vocabulary:characterizes]: Donor [id:0000082]
subclass of: obo vocabulary:Entity

Pore volume [id:0000025]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000025
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Pore volume
type: Class
description: The pores in the material considered collectively. []
characterizes [obo_vocabulary:characterizes]: Porosity [id:0000017]
subclass of: obo vocabulary:Entity

In vivo study [id:0000027]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000027
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: In vivo study
type: Class
obo vocabulary:namespace: obi
description: A study design that is conducted entirely in a living organism, e.g. a compound treatment in a mouse model. [OBI:0001199]
subclass of: Experiment [id:0000021]

Ectopic implant [id:0000029]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000029
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Ectopic implant
type: Class
description: An substitute material implant out of the original place. []
subclass of: Implant [id:0000028]

Orthotopic implant [id:0000030]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000030
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Orthotopic implant
type: Class
description: A substitute material implant in the original place. []
subclass of: Implant [id:0000028]

Connective tissue [id:0000031]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000031
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Connective tissue
type: Class
obo vocabulary:namespace: bto
description: The tissue which binds together and is the support of the various structures of the body. It is made up of fibroblasts, fibroglia, collagen fibrils, and elastic fibrils. It is derived from the mesoderm and in a broad sense includes the collagenous, elastic, mucous, reticular, osseous, and cartilaginous tissue. Some also include the blood in this group of tissues. Connective tissue is classified according to concentration of fibers as loose (areolar) and dense, the latter having more abundant fibers than the former. [BTO:0000421]
subclass of: Neoformed tissue [id:0000007]
subclass of: Natural tissue [id:0000103]

Natural tissue [id:0000103]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000103
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Natural tissue
type: Class
description: Natural tissue located within the organism in the natural site. []
subclass of: Tissue [id:0000102]
obo vocabulary:part of: Organism [id:0000075]

Other ceramic material [id:0000032]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000032
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other ceramic material
type: Class
description: Ceramic materials not included in the ceramic list. []
subclass of: Ceramic [id:0000115]

Ceramic [id:0000115]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000115
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Ceramic
type: Class
description: Inorganic, nonmetallic solid prepared by the action of heat and subsequent cooling. []
subclass of: Biomaterial [id:0000035]

Gender [id:0000034]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000034
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Gender
type: Class
obo vocabulary:namespace: snomedct
description: Range of physical, mental, and behavioral characteristics distinguishing between masculinity and femininity. [SNOMEDCT:263495000]
characterizes [obo_vocabulary:characterizes]: Donor [id:0000082]
characterizes [obo_vocabulary:characterizes]: Host [id:0000083]
subclass of: obo vocabulary:Entity

Intrinsic property [id:0000036]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000036
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Intrinsic property
type: Class
description: an essential or inherent property of a system or of a material itself or within. It is independent of how much of the material is present and is independent of the form of the material. Intrinsic properties are dependent mainly on the chemical composition or structure of the material. []
characterizes [obo_vocabulary:characterizes]: Biomaterial [id:0000035]
subclass of: obo vocabulary:Entity

Physical property [id:0000037]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000037
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Physical property
type: Class
description: Material's property that can be discerned without changing the chemical identity of the sample and that can be used to characterize matter and energy and their interactions. []
subclass of: Intrinsic property [id:0000036]

Chemical property [id:0000038]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000038
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Chemical property
type: Class
description: Material's property that becomes evident during a chemical reaction. []
subclass of: Intrinsic property [id:0000036]

Hydrophilicity [id:0000039]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000039
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Hydrophilicity
type: Class
description: Property of a molecular entity to be attracted to, and tends to be dissolved by, water. []
subclass of: Chemical property [id:0000038]
characterizes [obo_vocabulary:characterizes]: Chitosan gel [id:0000178]
characterizes [obo_vocabulary:characterizes]: Gelatin [id:0000179]
characterizes [obo_vocabulary:characterizes]: Dextran gel [id:0000180]
characterizes [obo_vocabulary:characterizes]: Polyethylene glycol gel [id:0000181]
characterizes [obo_vocabulary:characterizes]: Chitosan-alginate composite [id:0000182]

Chitosan gel [id:0000178]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000178
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Chitosan gel
type: Class
description: Gel obtained from chitosan, a linear polysaccharide composed of randomly distributed beta-(1-4)-linked D-glucosamine (deacetylated unit) and N-acetyl-D-glucosamine (acetylated unit), made by treating shrimp and other crustacean shells with the alkali sodium hydroxide. []
subclass of: Gel [id:0000084]

Gelatin [id:0000179]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000179
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Gelatin
type: Class
description: Translucent, colorless, brittle (when dry), flavorless solid substance, derived from collagen obtained from various animal by-products. []
subclass of: Gel [id:0000084]

Dextran gel [id:0000180]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000180
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Dextran gel
type: Class
description: Gel based on dextran, a complex, branched glucan (polysaccharide made of many glucose molecules) composed of chains of varying lengths (from 3 to 2000 kilodaltons). []
subclass of: Gel [id:0000084]

Polyethylene glycol gel [id:0000181]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000181
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polyethylene glycol gel
type: Class
description: Gel deriving from polyethylene glycol, produced by the interaction of ethylene oxide with water. []
subclass of: Gel [id:0000084]

Chitosan-alginate composite [id:0000182]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000182
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Chitosan-alginate composite
type: Class
description: Material whose components are chitosan and alginate. []
subclass of: Composite [id:0000154]

Biocompatibility [id:0000040]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000040
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Biocompatibility
type: Class
description: Ability of a material to perform with an appropriate host response in a specific situation. []
subclass of: Chemical property [id:0000038]
characterizes [obo_vocabulary:characterizes]: Titanium [id:0000089]
characterizes [obo_vocabulary:characterizes]: Alumina [id:0000090]
characterizes [obo_vocabulary:characterizes]: Glass ceramic [id:0000094]
characterizes [obo_vocabulary:characterizes]: Bioglass [id:0000095]
characterizes [obo_vocabulary:characterizes]: Tricalcium phosphate [id:0000096]
characterizes [obo_vocabulary:characterizes]: Calcium oxide [id:0000098]
characterizes [obo_vocabulary:characterizes]: Calcium carbonate [id:0000099]
characterizes [obo_vocabulary:characterizes]: Gypsum [id:0000100]
characterizes [obo_vocabulary:characterizes]: Collagen [id:0000113]
characterizes [obo_vocabulary:characterizes]: Chitosan [id:0000114]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic [id:0000116]
characterizes [obo_vocabulary:characterizes]: Hydroxyapatite [id:0000150]
characterizes [obo_vocabulary:characterizes]: Silicon-substituted tricalcium phosphate and hydroxyapatite [id:0000210]
characterizes [obo_vocabulary:characterizes]: Silk [id:0000211]
characterizes [obo_vocabulary:characterizes]: Titanium dioxide [id:0000212]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite-collagen [id:0000213]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-tricalcium phosphate [id:0000214]
characterizes [obo_vocabulary:characterizes]: SPCL-Si [id:0000215]
characterizes [obo_vocabulary:characterizes]: Collagen-polylactic-co-glycolic acid [id:0000216]
characterizes [obo_vocabulary:characterizes]: Strontium-hardystonite-gahnite [id:0000218]
characterizes [obo_vocabulary:characterizes]: Baghdadite-polycaprolactone-glass nanoparticle [id:0000219]
characterizes [obo_vocabulary:characterizes]: Bioglass-collagen-phosphatidylserine [id:0000222]
characterizes [obo_vocabulary:characterizes]: Collagen-glycosaminoglycan [id:0000224]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic-chitosan [id:0000225]
characterizes [obo_vocabulary:characterizes]: Magnesium-calcium phosphate [id:0000245]

Titanium [id:0000089]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000089
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Titanium
type: Class
description: Chemical element with symbol Ti and atomic number 22. It has a low density and is a strong, lustrous, corrosion-resistant (including sea water, aqua regia and chlorine) transition metal with a silver color. []
subclass of: Metal [id:0000117]

Alumina [id:0000090]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000090
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Alumina
type: Class
description: Chemical compound of aluminium and oxygen with the chemical formula Al2O3. []
obo vocabulary:related synonym: Aloxide
obo vocabulary:related synonym: Aluminium oxide
subclass of: Ceramic [id:0000115]

Glass ceramic [id:0000094]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000094
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Glass ceramic
type: Class
description: Polycrystalline material produced through controlled crystallization of base glass. []
subclass of: Ceramic [id:0000115]

Bioglass [id:0000095]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000095
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bioglass
type: Class
description: Family of bioactive glasses, composed of SiO2, Na2O, CaO and P2O5 in specific proportions. []
subclass of: Ceramic [id:0000115]

Tricalcium phosphate [id:0000096]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000096
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Tricalcium phosphate
type: Class
description: Calcium salt of phosphoric acid with the chemical formula Ca3(PO4)2. []
obo vocabulary:related synonym: Bone phosphate of lime
obo vocabulary:related synonym: BPL
obo vocabulary:related synonym: Tribasic calcium phosphate
subclass of: Ceramic [id:0000115]

Calcium oxide [id:0000098]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000098
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Calcium oxide
type: Class
description: Chemical compound with the formula CaO. []
obo vocabulary:related synonym: Burnt lime
obo vocabulary:related synonym: Quicklime
subclass of: Ceramic [id:0000115]

Calcium carbonate [id:0000099]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000099
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Calcium carbonate
type: Class
description: Chemical compound with the formula CaCO3. []
subclass of: Ceramic [id:0000115]

Gypsum [id:0000100]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000100
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Gypsum
type: Class
description: Very soft sulfate mineral composed of calcium sulfate dihydrate, with the chemical formula CaSO4·2H2O. []
subclass of: Ceramic [id:0000115]

Collagen [id:0000113]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000113
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Collagen
type: Class
description: Group of naturally occurring proteins found in animals, especially in the flesh and connective tissues of vertebrates. It is the main component of connective tissue, and is the most abundant protein in mammals, making up about 25% to 35% of the whole-body protein content. []
subclass of: Polymer [id:0000119]

Chitosan [id:0000114]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000114
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Chitosan
type: Class
obo vocabulary:namespace: chebi
description: An aminoglycan consisting of beta-(1->4)-linked D-glucosamine residues. [CHEBI:16261]
subclass of: Polymer [id:0000119]

Calcium-phosphate based ceramic [id:0000116]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000116
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Calcium-phosphate based ceramic
type: Class
description: Name given to a family of minerals containing calcium ions (Ca2+) together with orthophosphates (PO43-) []
subclass of: Ceramic [id:0000115]

Hydroxyapatite [id:0000150]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000150
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Hydroxyapatite
type: Class
description: Naturally occurring mineral form of calcium apatite with the formula Ca5(PO4)3(OH). Up to 50% of bone by weight is a modified form of hydroxyapatite (known as bone mineral). []
obo vocabulary:related synonym: HA
obo vocabulary:related synonym: Hydroxylapatite
obo vocabulary:related synonym: Synthetic hydroxyapatite
subclass of: Ceramic [id:0000115]

Silicon-substituted tricalcium phosphate and hydroxyapatite [id:0000210]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000210
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Silicon-substituted tricalcium phosphate and hydroxyapatite
type: Class
description: Material whose components are silicon, tricalcium phosphate and hydroxyapatite. []
subclass of: Composite [id:0000154]

Silk [id:0000211]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000211
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Silk
type: Class
obo vocabulary:namespace: msh
description: A continuous protein fiber consisting primarily of fibroids. It is synthesized by a variety of insects and arachnids. [MeSH:D047011]
subclass of: Polymer [id:0000119]

Titanium dioxide [id:0000212]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000212
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Titanium dioxide
type: Class
obo vocabulary:namespace: chebi
description: A titanium molecular entity that has formula O2Ti. [CHEBI:32234]
subclass of: Ceramic [id:0000115]

Polycaprolactone-hydroxyapatite-collagen [id:0000213]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000213
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polycaprolactone-hydroxyapatite-collagen
type: Class
description: Material whose components are polycaprolactone, collagen and hydroxyapatite. []
subclass of: Composite [id:0000154]

Polycaprolactone-tricalcium phosphate [id:0000214]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000214
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polycaprolactone-tricalcium phosphate
type: Class
description: Material whose components are polycaprolactone and tricalcium phosphate. []
subclass of: Composite [id:0000154]

SPCL-Si [id:0000215]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000215
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: SPCL-Si
type: Class
description: Functionalized material. A blend of corn starch with polycaprolactone used to produce three-dimensional fibre meshes scaffolds, coupled with a calcium silicate solution for the in situ functionalization with Si-OH groups. []
obo vocabulary:comment: From: Rodrigues AI et al. Bioactive starch-based scaffolds and human adipose stem cells are a good combination for bone tissue engineering. Acta Biomater. 2012, 8(10):3765-76.
subclass of: Composite [id:0000154]

Collagen-polylactic-co-glycolic acid [id:0000216]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000216
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Collagen-polylactic-co-glycolic acid
type: Class
description: Material whose components are collagen and polylactic-co-glycolic acid. []
subclass of: Composite [id:0000154]

Strontium-hardystonite-gahnite [id:0000218]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000218
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Strontium-hardystonite-gahnite
type: Class
description: Ceramic material where Ca, Sr, Zn and Si ions have been incorporated. []
obo vocabulary:comment: From: Roohani-Esfahani SI et al. Unique microstructural design of ceramic scaffolds for bone regeneration under load. Acta Biomater. 2013, 9(6):7014-24.
obo vocabulary:related synonym: Sr-HT-gahnite
subclass of: Ceramic [id:0000115]

Baghdadite-polycaprolactone-glass nanoparticle [id:0000219]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000219
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Baghdadite-polycaprolactone-glass nanoparticle
type: Class
description: Baghdadite scaffolds were coated in polycaprolactone and nanoparticles of bio-glass. The PCL coating increased the scaffolds toughness while nBG enhanced bioactivity. []
subclass of: Other biomaterials [id:0000175]

Bioglass-collagen-phosphatidylserine [id:0000222]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000222
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bioglass-collagen-phosphatidylserine
type: Class
description: Material whose components are bioglass, collagen and phosphatidylserine. []
subclass of: Composite [id:0000154]

Collagen-glycosaminoglycan [id:0000224]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000224
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Collagen-glycosaminoglycan
type: Class
obo vocabulary:namespace: msh
description: Material whose components are collagen and glycosaminoglycan [MeSH:C058506]
obo vocabulary:related synonym: Collagen-GAG
subclass of: Composite [id:0000154]

Calcium-phosphate based ceramic-chitosan [id:0000225]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000225
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Calcium-phosphate based ceramic-chitosan
type: Class
description: Material whose components are calcium-phosphate based ceramic and chitosan. []
subclass of: Composite [id:0000154]

Magnesium-calcium phosphate [id:0000245]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000245
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Magnesium-calcium phosphate
type: Class
description: Biocement fabricated by using the mixed powders of magnesium oxide (MgO) and calcium dihydrogen phosphate (Ca(H2PO4)2·H2O). []
obo vocabulary:related synonym: MCPB
subclass of: Ceramic [id:0000115]

Hydrophobicity [id:0000041]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000041
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Hydrophobicity
type: Class
description: Property of a molecular entity that is repelled from a mass of water. []
subclass of: Chemical property [id:0000038]
characterizes [obo_vocabulary:characterizes]: Titanium [id:0000089]
characterizes [obo_vocabulary:characterizes]: Alumina [id:0000090]
characterizes [obo_vocabulary:characterizes]: Glass ceramic [id:0000094]
characterizes [obo_vocabulary:characterizes]: Bioglass [id:0000095]
characterizes [obo_vocabulary:characterizes]: Tricalcium phosphate [id:0000096]
characterizes [obo_vocabulary:characterizes]: Collagen [id:0000113]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone [id:0000167]
characterizes [obo_vocabulary:characterizes]: Silicon-substituted tricalcium phosphate and hydroxyapatite [id:0000210]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite-collagen [id:0000213]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-tricalcium phosphate [id:0000214]
characterizes [obo_vocabulary:characterizes]: SPCL-Si [id:0000215]
characterizes [obo_vocabulary:characterizes]: Collagen-polylactic-co-glycolic acid [id:0000216]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-polylactic-co-glycolic acid [id:0000217]
characterizes [obo_vocabulary:characterizes]: Baghdadite-polycaprolactone-glass nanoparticle [id:0000219]
characterizes [obo_vocabulary:characterizes]: Bioglass-collagen-phosphatidylserine [id:0000222]
characterizes [obo_vocabulary:characterizes]: Collagen-glycosaminoglycan [id:0000224]

Polycaprolactone [id:0000167]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000167
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polycaprolactone
type: Class
description: Biodegradable polyester prepared by ring opening polymerization of caprolactone using a catalyst such as stannous octoate. []
obo vocabulary:related synonym: PCL
subclass of: Polymer [id:0000119]

Polycaprolactone-polylactic-co-glycolic acid [id:0000217]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000217
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polycaprolactone-polylactic-co-glycolic acid
type: Class
description: Material whose components are polycaprolactone and polylactic-co-glycolic acid. []
subclass of: Composite [id:0000154]

Resorbability [id:0000042]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000042
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Resorbability
type: Class
description: Property of a material that, upon placement within the organism, starts to dissolve (resorbed) and, in some cases, is slowly replaced by advancing tissue (such as bone). []
subclass of: Chemical property [id:0000038]
characterizes [obo_vocabulary:characterizes]: Ultra high molecular weight polyethylene [id:0000092]
characterizes [obo_vocabulary:characterizes]: Tricalcium phosphate [id:0000096]
characterizes [obo_vocabulary:characterizes]: Polylactic acid [id:0000097]
characterizes [obo_vocabulary:characterizes]: Calcium oxide [id:0000098]
characterizes [obo_vocabulary:characterizes]: Calcium carbonate [id:0000099]
characterizes [obo_vocabulary:characterizes]: Gypsum [id:0000100]
characterizes [obo_vocabulary:characterizes]: Collagen [id:0000113]
characterizes [obo_vocabulary:characterizes]: Chitosan [id:0000114]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic [id:0000116]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone [id:0000167]
characterizes [obo_vocabulary:characterizes]: Alginate [id:0000177]
characterizes [obo_vocabulary:characterizes]: Chitosan gel [id:0000178]
characterizes [obo_vocabulary:characterizes]: Gelatin [id:0000179]
characterizes [obo_vocabulary:characterizes]: Dextran gel [id:0000180]
characterizes [obo_vocabulary:characterizes]: Polyethylene glycol gel [id:0000181]
characterizes [obo_vocabulary:characterizes]: Chitosan-alginate composite [id:0000182]
characterizes [obo_vocabulary:characterizes]: Collagen-hydroxyapatite composite [id:0000183]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite composite [id:0000184]
characterizes [obo_vocabulary:characterizes]: Collagen-chitosan composite [id:0000185]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-collagen composite [id:0000186]
characterizes [obo_vocabulary:characterizes]: Polyglycolic acid [id:0000188]
characterizes [obo_vocabulary:characterizes]: Poloxamine-polylysine acrylate [id:0000189]
characterizes [obo_vocabulary:characterizes]: Polylactic-co-glycolic acid [id:0000190]
characterizes [obo_vocabulary:characterizes]: Poly-L-lactide [id:0000200]
characterizes [obo_vocabulary:characterizes]: Silicon-substituted tricalcium phosphate and hydroxyapatite [id:0000210]
characterizes [obo_vocabulary:characterizes]: Silk [id:0000211]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite-collagen [id:0000213]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-tricalcium phosphate [id:0000214]
characterizes [obo_vocabulary:characterizes]: SPCL-Si [id:0000215]
characterizes [obo_vocabulary:characterizes]: Collagen-polylactic-co-glycolic acid [id:0000216]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-polylactic-co-glycolic acid [id:0000217]
characterizes [obo_vocabulary:characterizes]: Baghdadite-polycaprolactone-glass nanoparticle [id:0000219]
characterizes [obo_vocabulary:characterizes]: Bioglass-collagen-phosphatidylserine [id:0000222]
characterizes [obo_vocabulary:characterizes]: Polyurethane [id:0000223]
characterizes [obo_vocabulary:characterizes]: Collagen-glycosaminoglycan [id:0000224]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic-chitosan [id:0000225]
characterizes [obo_vocabulary:characterizes]: Magnesium-calcium phosphate [id:0000245]

Ultra high molecular weight polyethylene [id:0000092]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000092
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Ultra high molecular weight polyethylene
type: Class
description: Subset of the thermoplastic polyethylene, characterized by extremely long chains, with a molecular weight usually between 2 and 6 million. The longer chain serves to transfer load more effectively to the polymer backbone by strengthening intermolecular interactions. []
obo vocabulary:related synonym: High-modulus polyethylene
obo vocabulary:related synonym: High-performance polyethylene
obo vocabulary:related synonym: HMPE
obo vocabulary:related synonym: HPPE
obo vocabulary:related synonym: UHMW
obo vocabulary:related synonym: UHMWPE
subclass of: Polymer [id:0000119]

Polylactic acid [id:0000097]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000097
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polylactic acid
type: Class
description: Athermoplastic aliphatic polyester derived from renewable resources. []
obo vocabulary:related synonym: PLA
obo vocabulary:related synonym: Polylactide
subclass of: Polymer [id:0000119]

Alginate [id:0000177]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000177
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Alginate
type: Class
description: Anionic polysaccharide distributed widely in the cell walls of brown algae, where through binding with water it forms a viscous gum. Characterized by biocompatibility and simple gelation with divalent cations such as Ca2+. []
subclass of: Gel [id:0000084]

Collagen-hydroxyapatite composite [id:0000183]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000183
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Collagen-hydroxyapatite composite
type: Class
description: Material whose components are collagen and hydroxyapatite. []
subclass of: Composite [id:0000154]

Polycaprolactone-hydroxyapatite composite [id:0000184]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000184
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polycaprolactone-hydroxyapatite composite
type: Class
description: Material whose components are hydroxyapatite and polycaprolactone. []
obo vocabulary:related synonym: PCL-HA
subclass of: Composite [id:0000154]

Collagen-chitosan composite [id:0000185]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000185
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Collagen-chitosan composite
type: Class
description: Material whose components are chitosan and collagen. []
subclass of: Composite [id:0000154]

Polycaprolactone-collagen composite [id:0000186]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000186
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polycaprolactone-collagen composite
type: Class
description: Material whose components are collagen and polycaprolactone. []
subclass of: Composite [id:0000154]

Polyglycolic acid [id:0000188]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000188
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polyglycolic acid
type: Class
description: Polymer prepared starting from glycolic acid by means of polycondensation or ring-opening polymerization. []
obo vocabulary:related synonym: PGA
obo vocabulary:related synonym: Polyglycolide
subclass of: Polymer [id:0000119]

Poloxamine-polylysine acrylate [id:0000189]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000189
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Poloxamine-polylysine acrylate
type: Class
description: Polymer for tissue engineering applications composed by polylysine, used to confer endothelial cell attachment properties to the poloxamine-based polymer, and acrylate, which makes it photo-cross-linkable. []
obo vocabulary:related synonym: PPA
subclass of: Polymer [id:0000119]

Polylactic-co-glycolic acid [id:0000190]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000190
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polylactic-co-glycolic acid
type: Class
description: Copolymer synthesized by means of random ring-opening co-polymerization of two different monomers, the cyclic dimers (1,4-dioxane-2,5-diones) of glycolic acid and lactic acid. []
obo vocabulary:related synonym: PLGA
subclass of: Polymer [id:0000119]

Poly-L-lactide [id:0000200]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000200
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Poly-L-lactide
type: Class
description: Form of polylactide, having lactic acid a chiral nature, and it is the product resulting from polymerization of L,L-lactide. []
obo vocabulary:related synonym: L-lactide
obo vocabulary:related synonym: PLLA
subclass of: Polymer [id:0000119]

Polyurethane [id:0000223]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000223
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polyurethane
type: Class
obo vocabulary:namespace: msh
description: A group of thermoplastic or thermosetting polymers containing polyisocyanate. They are used as elastomers, as coatings, as fibers and as foams. [MeSH:D011140]
subclass of: Polymer [id:0000119]

Thermal stability [id:0000043]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000043
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Thermal stability
type: Class
description: Stability of a molecule at high temperatures. []
subclass of: Physical property [id:0000037]
characterizes [obo_vocabulary:characterizes]: Stainless steel [id:0000086]
characterizes [obo_vocabulary:characterizes]: Titanium [id:0000089]
characterizes [obo_vocabulary:characterizes]: Alumina [id:0000090]
characterizes [obo_vocabulary:characterizes]: Partially stabilised zirconia [id:0000091]
characterizes [obo_vocabulary:characterizes]: Glass ceramic [id:0000094]
characterizes [obo_vocabulary:characterizes]: Bioglass [id:0000095]
characterizes [obo_vocabulary:characterizes]: Tricalcium phosphate [id:0000096]
characterizes [obo_vocabulary:characterizes]: Polylactic acid [id:0000097]
characterizes [obo_vocabulary:characterizes]: Calcium oxide [id:0000098]
characterizes [obo_vocabulary:characterizes]: Calcium carbonate [id:0000099]
characterizes [obo_vocabulary:characterizes]: Gypsum [id:0000100]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic [id:0000116]
characterizes [obo_vocabulary:characterizes]: Hydroxyapatite [id:0000150]
characterizes [obo_vocabulary:characterizes]: Polyethylene glycol [id:0000176]
characterizes [obo_vocabulary:characterizes]: Silicon-substituted tricalcium phosphate and hydroxyapatite [id:0000210]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite-collagen [id:0000213]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-tricalcium phosphate [id:0000214]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic-chitosan [id:0000225]

Stainless steel [id:0000086]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000086
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Stainless steel
type: Class
description: Steel alloy with a minimum of 10.5%[1] to 11% chromium content by mass. It does not readily corrode, rust or stain with water as ordinary steel does, but despite the name it is not fully stain-proof, most notably under low oxygen, high salinity, or poor circulation environments. []
obo vocabulary:related synonym: Inox
obo vocabulary:related synonym: Inox steel
subclass of: Metal [id:0000117]

Partially stabilised zirconia [id:0000091]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000091
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Partially stabilised zirconia
type: Class
description: Non-metallic structural material that combines hardness, reduced fragility, and chemical inertness with high chemical stability in aggressive environments throughout a wide temperature range. []
subclass of: Other biomaterials [id:0000175]

Polyethylene glycol [id:0000176]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000176
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polyethylene glycol
type: Class
description: Polyether compound whose structure is H-(O-CH2-CH2)n-OH. []
obo vocabulary:related synonym: PEG
subclass of: Polymer [id:0000119]

Electrical conductivity [id:0000044]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000044
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Electrical conductivity
type: Class
description: It measures a material's ability to conduct an electric current. []
subclass of: Physical property [id:0000037]
characterizes [obo_vocabulary:characterizes]: Stainless steel [id:0000086]
characterizes [obo_vocabulary:characterizes]: Titanium [id:0000089]

Thermal conductivity [id:0000045]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000045
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Thermal conductivity
type: Class
description: Property of a material to conduct heat. []
subclass of: Physical property [id:0000037]
characterizes [obo_vocabulary:characterizes]: Stainless steel [id:0000086]
characterizes [obo_vocabulary:characterizes]: Titanium [id:0000089]

Age [id:0000046]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000046
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Age
type: Class
obo vocabulary:namespace: mo
description: A temporal measurement of the time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting). [MO:467]
characterizes [obo_vocabulary:characterizes]: Donor [id:0000082]
characterizes [obo_vocabulary:characterizes]: Host [id:0000083]
subclass of: obo vocabulary:Entity

Cell seeding time [id:0000047]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000047
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell seeding time
type: Class
characterizes [obo_vocabulary:characterizes]: Cell seeding [id:0000000]
subclass of: obo vocabulary:Entity

Cell expansion time [id:0000048]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000048
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell expansion time
type: Class
description: Duration of the cellular expansion phase. []
characterizes [obo_vocabulary:characterizes]: Cell expansion [id:0000001]
subclass of: obo vocabulary:Entity

Cell quantity [id:0000049]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000049
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell quantity
type: Class
description: Amount of used cells. []
characterizes [obo_vocabulary:characterizes]: Cell seeding [id:0000000]
characterizes [obo_vocabulary:characterizes]: Cell expansion [id:0000001]
subclass of: obo vocabulary:Entity

Diameter [id:0000050]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000050
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Diameter
type: Class
obo vocabulary:namespace: pato
description: A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. [PATO:0001334]
subclass of: Size [id:0000022]

Pore size [id:0000051]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000051
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Pore size
type: Class
description: It gives an indication of the median or mean size of the pores on a membrane surface. []
subclass of: Size [id:0000022]
characterizes [obo_vocabulary:characterizes]: Porosity [id:0000017]

Mechanics analysis [id:0000052]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000052
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mechanics analysis
type: Class
description: Studies about the mechanical behavior of materials, especially their motion and deformation under the action of forces, temperature changes, phase changes, and other external or internal agents. []
subclass of: Cellular response evaluation [id:0000033]

Pore size distribution [id:0000053]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000053
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Pore size distribution
type: Class
description: It is the relative abundance of each pore size in a representative volume. []
characterizes [obo_vocabulary:characterizes]: Porosity [id:0000017]
subclass of: obo vocabulary:Entity

Biomolecular analysis [id:0000054]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000054
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Biomolecular analysis
type: Class
description: Investigation of biomolecules, which are molecules that are involved in the maintenance and metabolic processes of all living organisms. []
subclass of: Cellular response evaluation [id:0000033]

Length [id:0000055]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000055
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Length
type: Class
description: The measurement of the extent of something along its greatest dimension. []
subclass of: Size [id:0000022]

Height [id:0000056]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000056
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Height
type: Class
description: The distance from the base of something to the top. []
subclass of: Size [id:0000022]

Width [id:0000057]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000057
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Width
type: Class
description: A piece of material measured along its smaller dimension or its crosswise grain. []
subclass of: Size [id:0000022]

Cylinder [id:0000058]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000058
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cylinder
type: Class
description: A solid geometric figure with straight parallel sides and a circular or oval section. []
subclass of: Shape [id:0000026]

Sphere [id:0000059]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000059
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Sphere
type: Class
description: A three-dimensional surface, all points of which are equidistant from a fixed point. []
subclass of: Shape [id:0000026]

Atomic Force Microscopy [id:0000060]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000060
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Atomic Force Microscopy
type: Class
description: Very high-resolution type of scanning probe microscopy, with demonstrated resolution on the order of fractions of a nanometer, more than 1000 times better than the optical diffraction limit. The information is gathered by feeling the surface with a mechanical probe. Piezoelectric elements that facilitate tiny but accurate and precise movements on (electronic) command enable the very precise scanning. []
obo vocabulary:related synonym: AFM
subclass of: Mechanics analysis [id:0000052]
subclass of: Morphology analysis [id:0000071]

Morphology analysis [id:0000071]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000071
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Morphology analysis
type: Class
description: Investigations about the form and structure of organisms and their specific features. []
subclass of: Cellular response evaluation [id:0000033]

Dynamic Mechanical Analysis [id:0000061]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000061
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Dynamic Mechanical Analysis
type: Class
description: Technique used to study and characterize materials. It is most useful for studying the viscoelastic behavior of polymers. A sinusoidal stress is applied and the strain in the material is measured, allowing one to determine the complex modulus. The temperature of the sample or the frequency of the stress are often varied, leading to variations in the complex modulus. Each test provides a stress-strain curve as output, which describes the relationship between the applied stress and the shown strain for a particular material. []
obo vocabulary:related synonym: DMA
subclass of: Mechanics analysis [id:0000052]

X-ray microtomography [id:0000062]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000062
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: X-ray microtomography
type: Class
description: Microtomography uses a similar technique as X-ray tomography systems used in medicine (CT Scans) but with much finer resolution. Multiple 2D X-ray images are stored while either the sample or the source / detector pair is rotated. Internal structures are reconstructed as a series of 2D cross sections (up to 2600 in a single scan) which are then used to analyze the two and three dimensional morphological parameters of the object. The process is non destructive and requires no special preparation of the specimen. []
obo vocabulary:related synonym: Micro-CT
subclass of: Morphology analysis [id:0000071]

Real-time polymerase chain reaction [id:0000063]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000063
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Real-time polymerase chain reaction
type: Class
obo vocabulary:namespace: obi
description: A laboratory technique based on the PCR, which is used to amplify and simultaneously quantify a specific DNA molecule based on the use of complementary probes/primers. It enables both detection and quantification (as absolute number of copies or relative amount when normalized to DNA input or additional normalizing genes) of one or more specific sequences in a DNA sample. [OBI:0000893]
obo vocabulary:related synonym: Kinetic polymerase chain reaction
obo vocabulary:related synonym: qPCR
obo vocabulary:related synonym: Quantitative real time polymerase chain reaction
obo vocabulary:related synonym: Real Time PCR
subclass of: Biomolecular analysis [id:0000054]

Transmission electron microscopy [id:0000064]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000064
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Transmission electron microscopy
type: Class
description: Microscopy technique whereby a beam of electrons is transmitted through an ultra thin specimen, interacting with the specimen as it passes through. TEMs are capable of imaging at a significantly higher resolution than light microscopes: this enables to examine fine detail. An image is formed from the interaction of the electrons transmitted through the specimen; the image is magnified and focused onto an imaging device, such as a fluorescent screen, on a layer of photographic film, or to be detected by a sensor such as a CCD camera. []
obo vocabulary:related synonym: TEM
subclass of: Morphology analysis [id:0000071]

Gene expression microarray [id:0000065]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000065
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Gene expression microarray
type: Class
description: Gene expression microarray technology measures the relative activity of previously identified target genes and provide the gene expression profiling, which is the measurement, at once, of the activation of thousands of genes, to create a global picture of cellular function. []
obo vocabulary:related synonym: DNA microarray
subclass of: Biomolecular analysis [id:0000054]

Mass Spectrometry [id:0000066]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000066
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mass Spectrometry
type: Class
obo vocabulary:namespace: obi
description: Measuring method consisting of turning elements in a sample into ions, isolating them according to the ratio between the mass and charge numbers and detecting it electrically. [OBI:0000470]
x pride [obo_vocabulary:x-pride]: pride:0000027
subclass of: Biomolecular analysis [id:0000054]

x pride [obo_vocabulary:x-pride]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: x-pride
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: x pride
type: ObjectProperty

pride:0000027
bio2rdf vocabulary:namespace: pride
bio2rdf vocabulary:identifier: 0000027
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/pride/0000027
type: pride resource [pride_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Immunohistofluorescence [id:0000067]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000067
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Immunohistofluorescence
type: Class
description: Histofluorescence (fluorescence of the tissues under exposure to ultraviolet rays following the injection of a fluorescent substance or as a result of a natural fluorescing substance) accomplished by injection of antibody labeled with fluorochrome. []
obo vocabulary:related synonym: IHF
subclass of: Biomolecular analysis [id:0000054]

Histochemical staining [id:0000068]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000068
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Histochemical staining
type: Class
description: study of the microscopic anatomy of cells and tissues of plants and animals. It is commonly performed by examining cells and tissues by sectioning and staining, followed by examination under a light microscope or electron microscope. Histological studies may be conducted via tissue culture, where live cells can be isolated and maintained in a proper environment outside the body for various research projects. The ability to visualize or differentially identify microscopic structures is frequently enhanced through the use of histological stains. []
obo vocabulary:x-obi: obi:0600020
subclass of: Morphology analysis [id:0000071]

obi:0600020
bio2rdf vocabulary:namespace: obi
bio2rdf vocabulary:identifier: 0600020
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/obi/0600020
type: obi vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Immunohistochemistry [id:0000069]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000069
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Immunohistochemistry
type: Class
obo vocabulary:namespace: mi
description: Method using an antibody coupled with some colouring agent to detect a specific protein within a tissue sample. In some cases the primary antibody is directly linked to a colouring agent, more often the primary antibody is targeted by a secondary antibody, targeting the primary antibody. [MI:1198]
obo vocabulary:related synonym: IHC
subclass of: Biomolecular analysis [id:0000054]

Scanning electron microscopy [id:0000070]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000070
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Scanning electron microscopy
type: Class
description: Electron microscope that produces images of a sample by scanning it with a focused beam of electrons. The electrons interact with electrons in the sample, producing various signals that can be detected and that contain information about the sample's surface topography and composition. The electron beam is generally scanned in a raster scan pattern, and the beam's position is combined with the detected signal to produce an image. SEM can achieve resolution better than 1 nanometer. []
obo vocabulary:related synonym: SEM
subclass of: Morphology analysis [id:0000071]

Chondrocyte [id:0000072]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000072
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Chondrocyte
type: Class
obo vocabulary:namespace: bto
description: Cartilage cells. They make the structural components of cartilage. [BTO:0000249]
subclass of: Cell [id:0000003]

Osteoblast [id:0000073]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000073
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Osteoblast
type: Class
obo vocabulary:namespace: cl
description: Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell. [CL:0000062]
subclass of: Cell [id:0000003]

Mesenchymal stem cell [id:0000074]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000074
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mesenchymal stem cell
type: Class
obo vocabulary:namespace: bto
description: A special adult stem cell, which is a multipotent stem cell, that can be found in bone marrow and can produce all cell types of bone, cartilage, fat, blood, and connective tissues. [BTO:0003298]
obo vocabulary:related synonym: MSC
subclass of: Cell [id:0000003]

Organism [id:0000075]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000075
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Organism
type: Class
obo vocabulary:namespace: obi
description: A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. [OBI:0100026]
subclass of: obo vocabulary:Entity

Cell concentration [id:0000076]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000076
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell concentration
type: Class
description: Amount of cells per volume of medium used. []
characterizes [obo_vocabulary:characterizes]: Cell seeding [id:0000000]
characterizes [obo_vocabulary:characterizes]: Cell expansion [id:0000001]
subclass of: obo vocabulary:Entity

Affymetrix technology [id:0000077]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000077
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Affymetrix technology
type: Class
description: Affymetrix is a US company that manufactures DNA microarrays. []
intervenes_in [obo_vocabulary:intervenes_in]: Gene expression microarray [id:0000065]
subclass of: obo vocabulary:Entity

Implant time [id:0000078]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000078
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Implant time
type: Class
description: Time when the substitue material is within the host. []
characterizes [obo_vocabulary:characterizes]: Implant [id:0000028]
subclass of: obo vocabulary:Entity

Cartilage [id:0000079]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000079
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cartilage
type: Class
obo vocabulary:namespace: bto
description: A specialized, fibrous connective tissue, forming most of the temporary skeleton of the embryo, providing a model in which most of the bones develop, and constituting an important part of the growth mechanism of the organism. It exists in several types, the most important of which are hyaline cartilage, elastic cartilage, and fibrocartilage. Also used as a general term to designate a mass of such tissue in a particular site in the body. [BTO:0000206]
subclass of: Connective tissue [id:0000031]
subclass of: Isolated tissue [id:0000104]

Bone marrow [id:0000080]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000080
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bone marrow
type: Class
obo vocabulary:namespace: bto
description: The soft, fatty, vascular tissue that fills most bone cavities and is the source of red blood cells and many white blood cells. [BTO:0000141]
x bto [obo_vocabulary:x-bto]: bto:0000141
subclass of: Isolated tissue [id:0000104]

x bto [obo_vocabulary:x-bto]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: x-bto
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: x bto
type: ObjectProperty

bto:0000141
bio2rdf vocabulary:namespace: bto
bio2rdf vocabulary:identifier: 0000141
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/bto/0000141
type: bto resource [bto_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Adipose tissue [id:0000081]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000081
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Adipose tissue
type: Class
obo vocabulary:namespace: bto
description: Connective tissue in which fat is stored and which has the cells distended by droplets of fat. [BTO:0001487]
x bto [obo_vocabulary:x-bto]: bto:0001487
subclass of: Isolated tissue [id:0000104]

bto:0001487
bio2rdf vocabulary:namespace: bto
bio2rdf vocabulary:identifier: 0001487
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/bto/0001487
type: bto resource [bto_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Gel [id:0000084]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000084
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Gel
type: Class
description: Solid, jelly-like material that can have properties ranging from soft and weak to hard and tough. Gels are defined as a substantially dilute cross-linked system, which exhibits no flow when in the steady-state. By weight, gels are mostly liquid, yet they behave like solids due to a three-dimensional cross-linked network within the liquid. It is the crosslinking within the fluid that give a gel its structure (hardness) and contribute to the adhesive stick. []
subclass of: Biomaterial [id:0000035]

Other metal material [id:0000085]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000085
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other metal material
type: Class
description: Metal materials not included in the previous list. []
subclass of: Metal [id:0000117]

Metal [id:0000117]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000117
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Metal
type: Class
description: Element, compound, or alloy that is a good conductor of both electricity and heat. Metals are usually shiny, malleable and ductile. []
subclass of: Biomaterial [id:0000035]

Other polymeric materials [id:0000087]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000087
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other polymeric materials
type: Class
description: Other polymeric materials not included in the previous list. []
subclass of: Polymer [id:0000119]

Polymer [id:0000119]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000119
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Polymer
type: Class
obo vocabulary:namespace: chebi
description: A mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc. [CHEBI:60027]
subclass of: Biomaterial [id:0000035]

Liquid Chromatography-Mass Spectrometry [id:0000088]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000088
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Liquid Chromatography-Mass Spectrometry
type: Class
obo vocabulary:namespace: nci_thesaurus
description: Hyphenated technique, combining the separation power of liquid chromatography (LC), an analytical chromatographic technique for separating ions or molecules dissolved in a solvent, with the detection power of mass spectrometry(MS), a technique to separate gas phase ions according their m/z (mass to charge ratio) value. Used for drug screening, pharmacology studies, environmental analyses and forensics. [Thesaurus:Liquid_Chromatography_Mass_Spectrometry]
obo vocabulary:related synonym: LC/MS
subclass of: Mass Spectrometry [id:0000066]

Other biomaterials [id:0000175]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000175
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other biomaterials
type: Class
subclass of: Biomaterial [id:0000035]

Other gel [id:0000093]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000093
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other gel
type: Class
description: Gel material not listed among the gels. []
subclass of: Gel [id:0000084]

Growth environment [id:0000101]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000101
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Growth environment
type: Class
obo vocabulary:namespace: obi
description: The collection of material entities and their qualities that are located near a live organism, tissue or cell and can influence its growth. [OBI:0000997]
intervenes_in [obo_vocabulary:intervenes_in]: Cell seeding [id:0000000]
intervenes_in [obo_vocabulary:intervenes_in]: Cell expansion [id:0000001]
intervenes_in [obo_vocabulary:intervenes_in]: Implant [id:0000028]
subclass of: obo vocabulary:Entity

Bone [id:0000105]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000105
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bone
type: Class
obo vocabulary:namespace: bto
description: The hard form of connective tissue that constitutes the majority of the skeleton of most vertebrates; it consists of an organic component (the cells and matrix) and an inorganic, or mineral, component; the matrix contains a framework of collagenous fibers and is impregnated with the mineral component, chiefly calcium phosphate (85 per cent) and calcium carbonate (10 per cent), which imparts the quality of rigidity to bone. [BTO:0000140]
subclass of: Connective tissue [id:0000031]

Homo sapiens [id:0000106]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000106
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Homo sapiens
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:9606
subclass of: Donor [id:0000082]

taxonomy:9606
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 9606
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/9606
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Mus musculus [id:0000107]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000107
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mus musculus
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:10090
subclass of: Donor [id:0000082]
subclass of: Host [id:0000083]

taxonomy:10090
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 10090
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/10090
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Rattus norvegicus [id:0000108]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000108
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Rattus norvegicus
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:10116
subclass of: Donor [id:0000082]
subclass of: Host [id:0000083]

taxonomy:10116
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 10116
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/10116
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Oryctolagus cuniculus [id:0000109]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000109
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Oryctolagus cuniculus
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:9986
subclass of: Donor [id:0000082]
subclass of: Host [id:0000083]

taxonomy:9986
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 9986
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/9986
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Bos taurus [id:0000110]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000110
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bos taurus
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:9913
subclass of: Donor [id:0000082]

taxonomy:9913
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 9913
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/9913
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Capra aegagrus hircus [id:0000111]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000111
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Capra aegagrus hircus
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:9925
subclass of: Host [id:0000083]

taxonomy:9925
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 9925
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/9925
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Weight [id:0000112]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000112
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Weight
type: Class
obo vocabulary:namespace: pato
description: A physical quality inhering in a bearer that has mass near a gravitational body. [PATO:0000128]
characterizes [obo_vocabulary:characterizes]: Host [id:0000083]
subclass of: obo vocabulary:Entity

Affymetrix chip [id:0000118]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000118
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Affymetrix chip
type: Class
obo vocabulary:namespace: ero
description: A nucleic acid microarray assay that uses the GeneChip System as the platform for analyzing complex genetic information. [ERO:0001265]
intervenes_in [obo_vocabulary:intervenes_in]: Affymetrix technology [id:0000077]
subclass of: obo vocabulary:Entity

Bioactivity [id:0000120]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000120
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bioactivity
type: Class
description: The effect/reaction/interaction/response of a given agent, such as a biomaterial or drug, upon a living organism or on living tissue. []
subclass of: Chemical property [id:0000038]
characterizes [obo_vocabulary:characterizes]: Glass ceramic [id:0000094]
characterizes [obo_vocabulary:characterizes]: Bioglass [id:0000095]
characterizes [obo_vocabulary:characterizes]: Tricalcium phosphate [id:0000096]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic [id:0000116]
characterizes [obo_vocabulary:characterizes]: Hydroxyapatite [id:0000150]
characterizes [obo_vocabulary:characterizes]: Collagen-hydroxyapatite composite [id:0000183]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite composite [id:0000184]
characterizes [obo_vocabulary:characterizes]: Silicon-substituted tricalcium phosphate and hydroxyapatite [id:0000210]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite-collagen [id:0000213]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-tricalcium phosphate [id:0000214]
characterizes [obo_vocabulary:characterizes]: Strontium-hardystonite-gahnite [id:0000218]
characterizes [obo_vocabulary:characterizes]: Calcium-phosphate based ceramic-chitosan [id:0000225]

Bioinertness [id:0000121]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000121
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bioinertness
type: Class
description: It refers to any material that once placed in the human body has minimal interaction with its surrounding tissue. Generally a fibrous capsule might form around bioinert implants hence its biofunctionality relies on tissue integration through the implant. []
subclass of: Chemical property [id:0000038]
characterizes [obo_vocabulary:characterizes]: Stainless steel [id:0000086]
characterizes [obo_vocabulary:characterizes]: Alumina [id:0000090]
characterizes [obo_vocabulary:characterizes]: Partially stabilised zirconia [id:0000091]
characterizes [obo_vocabulary:characterizes]: Ultra high molecular weight polyethylene [id:0000092]
characterizes [obo_vocabulary:characterizes]: Polylactic acid [id:0000097]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone [id:0000167]
characterizes [obo_vocabulary:characterizes]: Polyethylene glycol [id:0000176]
characterizes [obo_vocabulary:characterizes]: Alginate [id:0000177]
characterizes [obo_vocabulary:characterizes]: Chitosan gel [id:0000178]
characterizes [obo_vocabulary:characterizes]: Gelatin [id:0000179]
characterizes [obo_vocabulary:characterizes]: Dextran gel [id:0000180]
characterizes [obo_vocabulary:characterizes]: Polyethylene glycol gel [id:0000181]
characterizes [obo_vocabulary:characterizes]: Chitosan-alginate composite [id:0000182]
characterizes [obo_vocabulary:characterizes]: Polyglycolic acid [id:0000188]
characterizes [obo_vocabulary:characterizes]: Poloxamine-polylysine acrylate [id:0000189]
characterizes [obo_vocabulary:characterizes]: Polylactic-co-glycolic acid [id:0000190]
characterizes [obo_vocabulary:characterizes]: Poly-L-lactide [id:0000200]
characterizes [obo_vocabulary:characterizes]: SPCL-Si [id:0000215]
characterizes [obo_vocabulary:characterizes]: Collagen-polylactic-co-glycolic acid [id:0000216]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-polylactic-co-glycolic acid [id:0000217]
characterizes [obo_vocabulary:characterizes]: Baghdadite-polycaprolactone-glass nanoparticle [id:0000219]

Ultimate tensile strength [id:0000122]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000122
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Ultimate tensile strength
type: Class
description: Maximum stress that a material can withstand while being stretched or pulled before failing or breaking. []
obo vocabulary:related synonym: UTS
obo vocabulary:related synonym: Tensile strength
obo vocabulary:related synonym: TS
obo vocabulary:related synonym: Ultimate strength
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Tensile test [id:0000138]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]

Bulk modulus [id:0000123]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000123
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bulk modulus
type: Class
description: It measures the substance's resistance to uniform compression. It is defined as the ratio of the infinitesimal pressure increase to the resulting relative decrease of the volume. []
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Compression test [id:0000137]
derives_from [obo_vocabulary:derives_from]: Tensile test [id:0000138]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]
derives_from [obo_vocabulary:derives_from]: Torsion test [id:0000140]

Affymetrix protocol [id:0000124]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000124
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Affymetrix protocol
type: Class
description: The Affymetrix protocol first steps are RNA isolation and conversion to cDNA and cRNA. The RNA is then hybridized with the array probes (25-mer) and the unbound material washed away. Finally a signal amplifying reaction is performed, the microarray chip is ready to be scanned and the signal acquired. []
intervenes_in [obo_vocabulary:intervenes_in]: Affymetrix technology [id:0000077]
subclass of: obo vocabulary:Entity

Affymetrix raw data file [id:0000125]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000125
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Affymetrix raw data file
type: Class
description: DAT files contain raw image data; CEL files contain information about the expression levels of the individual probes; CHP files contain information about probe sets; EXP files contain information about experimental conditions and protocols. The CEL file (the most important for analysis) contains information about where each probe is on the chip, an intensity value, standard deviation of the intensity, the number of pixels used to calculate the intensity value, a flag to indicate an outlier as calculated by the algorithm and a user defined flag indicating the feature should be excluded from future analysis. []
derives_from [obo_vocabulary:derives_from]: Affymetrix technology [id:0000077]
subclass of: obo vocabulary:Entity

Illumina technology [id:0000126]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000126
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Illumina technology
type: Class
description: Illumina, Inc. is a US company that develops, manufactures and markets integrated systems for the analysis of genetic variation and biological function. []
intervenes_in [obo_vocabulary:intervenes_in]: Gene expression microarray [id:0000065]
subclass of: obo vocabulary:Entity

Illumina chip [id:0000127]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000127
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Illumina chip
type: Class
description: In Illumina's BeadArray Technology each bead is covered with hundreds of thousands of copies of a specific oligonucleotide that act as the capture sequences in one of Illumina's assays. Examples are MouseWG-6 v2.0 Expression BeadChip, HumanWG-6 Expression BeadChip. []
intervenes_in [obo_vocabulary:intervenes_in]: Illumina technology [id:0000126]
subclass of: obo vocabulary:Entity

Illumina raw data file [id:0000128]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000128
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Illumina raw data file
type: Class
description: Illumina BeadChip gene expression summary file contains the expression levels for each bead type on the arrays on the BeadChip. []
derives_from [obo_vocabulary:derives_from]: Illumina technology [id:0000126]
subclass of: obo vocabulary:Entity

Other gene expression microarray technologies [id:0000129]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000129
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other gene expression microarray technologies
type: Class
description: Other gene expression microarray techniques not included in the previous list. []
intervenes_in [obo_vocabulary:intervenes_in]: Gene expression microarray [id:0000065]
subclass of: obo vocabulary:Entity

Toluidine blue stain [id:0000130]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000130
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Toluidine blue stain
type: Class
description: It stains nucleic acids blue and polysaccharides purple. []
x fbbi [obo_vocabulary:x-fbbi]: fbbi:00000049
subclass of: Histochemical staining [id:0000068]

x fbbi [obo_vocabulary:x-fbbi]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: x-fbbi
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: x fbbi
type: ObjectProperty

fbbi:00000049
bio2rdf vocabulary:namespace: fbbi
bio2rdf vocabulary:identifier: 00000049
type: fbbi vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Alcian blue stains [id:0000131]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000131
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Alcian blue stains
type: Class
description: Family of polyvalent basic dyes used to stain acidic polysaccharides such as glycosaminoglycans in cartilages and other body structures, some types of mucopolysaccharides, sialylated glycocalyx of cells etc. []
x ndf rt [obo_vocabulary:x-ndf-rt]: ndfrt:N0000166971
subclass of: Histochemical staining [id:0000068]

x ndf rt [obo_vocabulary:x-ndf-rt]
bio2rdf vocabulary:namespace: obo_vocabulary
bio2rdf vocabulary:identifier: x-ndf-rt
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: x ndf rt
type: ObjectProperty

ndfrt:N0000166971
bio2rdf vocabulary:namespace: ndfrt
bio2rdf vocabulary:identifier: N0000166971
type: ndfrt resource [ndfrt_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Masson\'s trichrome stain [id:0000132]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000132
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Masson\'s trichrome stain
type: Class
description: Three-colour staining protocol able to distinguish cells from surrounding connective tissue. Most recipes produce red keratin and muscle fibers, blue or green collagen and bone, light red or pink cytoplasm, and dark brown to black cell nuclei. []
subclass of: Histochemical staining [id:0000068]

Other stain [id:0000133]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000133
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other stain
type: Class
description: Staining methods not listed before. []
subclass of: Histochemical staining [id:0000068]

Contact mode technique [id:0000134]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000134
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Contact mode technique
type: Class
description: Static mode operation where the static tip deflection is used as a feedback signal. The force between the tip and the surface is kept constant during scanning by maintaining a constant deflection. []
subclass of: Atomic Force Microscopy [id:0000060]

Non-contact mode technique [id:0000135]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000135
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Non-contact mode technique
type: Class
description: The tip of the cantilever does not contact the sample surface. The van der Waals forces, which are strongest from 1 nm to 10 nm above the surface, or any other long range force which extends above the surface acts to decrease the resonance frequency of the cantilever. The absence of repulsive forces permits its use in the imaging of soft samples and does not require conducting samples. []
subclass of: Atomic Force Microscopy [id:0000060]

Tapping mode technique [id:0000136]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000136
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Tapping mode technique
type: Class
description: The cantilever is driven to oscillate up and down at near its resonance frequency by a small piezoelectric element mounted in the AFM tip holder similar to non-contact mode. However, the amplitude of this oscillation is greater than 10 nm, typically 100 to 200 nm. The interaction of forces acting on the cantilever when the tip comes close to the surface, Van der Waals forces, dipole-dipole interactions, electrostatic forces, etc. cause the amplitude of this oscillation to decrease as the tip gets closer to the sample. []
subclass of: Atomic Force Microscopy [id:0000060]

Other mechanical test [id:0000141]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000141
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other mechanical test
type: Class
description: Test not included in the previous list. []
subclass of: Dynamic Mechanical Analysis [id:0000061]

Illumina protocol [id:0000142]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000142
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Illumina protocol
type: Class
description: The Illumina Gene Expression microarray system uses total RNA as starting material (minimum of 250ng of total RNA at a minimum concentration of 25ng/ul). RNA isolation, cDNA synthesis, and in vitro transcription amplification are followed by hybridization on 50-mer probe sequences (several hundred thou- sand copies of the probe across the bead surface). []
intervenes_in [obo_vocabulary:intervenes_in]: Illumina technology [id:0000126]
subclass of: obo vocabulary:Entity

Direct detection method protocol [id:0000143]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000143
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Direct detection method protocol
type: Class
description: The direct method is a one-step staining method and involves a labeled antibody (e.g. FITC-conjugated antiserum) reacting directly with the antigen in tissue sections. While this technique utilizes only one antibody and therefore is simple and rapid, the sensitivity is lower due to little signal amplification, such as with indirect methods, and is less commonly used than indirect methods. []
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistofluorescence [id:0000067]
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistochemistry [id:0000069]
subclass of: obo vocabulary:Entity

Indirect detection method protocol [id:0000144]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000144
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Indirect detection method protocol
type: Class
description: The indirect method involves an unlabeled primary antibody (first layer) that binds to the target antigen in the tissue and a labeled secondary antibody (second layer) that reacts with the primary antibody. The secondary antibody must be raised against the IgG of the animal species in which the primary antibody has been raised. This method is more sensitive than direct detection strategies because of signal amplification due to the binding of several secondary antibodies to each primary antibody if the secondary antibody is conjugated to the fluorescent or enzyme reporter. []
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistofluorescence [id:0000067]
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistochemistry [id:0000069]
subclass of: obo vocabulary:Entity

Formalin fixed paraffin embedded (FFPE) protocol [id:0000145]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000145
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Formalin fixed paraffin embedded (FFPE) protocol
type: Class
description: Tissue fixation in formalin (an aqueous solution containing formaldehyde) in order to prevent it from decaying or degeneration and to examine it clearly under a microscope for histological, pathological or cytological studies. The fixed tissue is then embedded in paraffin wax in order to solidify it and easily cut its fine sections. []
subclass of: Isolated tissue [id:0000104]
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistofluorescence [id:0000067]
intervenes_in [obo_vocabulary:intervenes_in]: Histochemical staining [id:0000068]
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistochemistry [id:0000069]

Hematoxylin-eosin stain [id:0000146]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000146
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Hematoxylin-eosin stain
type: Class
obo vocabulary:namespace: ero
description: A histology technique that involves the staining of cells with a blue nuclear stain, hemalum followed by counterstaining with eosin, which stains eosinophilic structures in various shades of red, pink and orange. [ERO:0001605]
subclass of: Histochemical staining [id:0000068]

Antibody [id:0000147]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000147
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Antibody
type: Class
obo vocabulary:namespace: go
description: An immunoglobulin complex that is secreted into extracellular space and found in mucosal areas or other tissues or circulating in the blood or lymph. In its canonical form, a circulating immunoglobulin complex is composed of two identical heavy chains and two identical light chains, held together by disulfide bonds. Some forms of are polymers of the basic structure and contain additional components such as J-chain and the secretory component. [GO:0042571]
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistofluorescence [id:0000067]
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistochemistry [id:0000069]
subclass of: obo vocabulary:Entity

Histochemistry stained tissue [id:0000148]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000148
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Histochemistry stained tissue
type: Class
description: Stained tissue are studied to define and examine: bulk tissues (for example muscle fibers or connective tissue), cell populations (i.e. different blood cells), or molecules within individual cells (for example DNA, proteins, lipids, carbohydrates). []
derives_from [obo_vocabulary:derives_from]: Histochemical staining [id:0000068]
subclass of: obo vocabulary:Entity

Immunohistochemistry stained tissue [id:0000149]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000149
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Immunohistochemistry stained tissue
type: Class
description: Biological staining is used to mark cells in flow cytometry, and to flag proteins or nucleic acids in tissues. Examples of proteins examined with this technique are BSP, Col I, Col II. []
derives_from [obo_vocabulary:derives_from]: Immunohistochemistry [id:0000069]
subclass of: obo vocabulary:Entity

Tandem Mass Spectrometry [id:0000151]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000151
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Tandem Mass Spectrometry
type: Class
obo vocabulary:namespace: nci_thesaurus
description: Mass spectrometers coupled in series. The targeted compound is selectively ionized, and its characteristic ions are separated from others in the mixture in the first mass spectrometer. The selected primary ions are then decomposed by collision, and from the resulting products the final mass analyzer selects secondary ions characteristic of the targeted compound. Tandem mass spectrometry can achieve specificities and sensitivities equivalent of those of methods such as radioimmunoassay and gas chromatography/mass spectrometry, while performing analyses in much shorter times. [Thesaurus:Tandem_Mass_Spectrometry]
obo vocabulary:related synonym: MS/MS
subclass of: Mass Spectrometry [id:0000066]

Mass spectra file [id:0000152]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000152
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mass spectra file
type: Class
description: MS/MS output file containing mass spectra, which show peaks due to the masses of the various ions produced by the fragmentation process. Spectra are converted into peptide sequence tags, used to identify a peptide in a protein database. []
derives_from [obo_vocabulary:derives_from]: Mass Spectrometry [id:0000066]
subclass of: obo vocabulary:Entity

Mass spectrometry sample preparation protocol [id:0000153]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000153
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mass spectrometry sample preparation protocol
type: Class
description: The protocol depends on the ion source different requirements for volume, concentration, and composition of the analyte solution. Furthermore, in protein mass spectrometry usually the protein of interest is cleaved into peptides before analysis, either by in-gel digestion or by proteolysis in solution. []
intervenes_in [obo_vocabulary:intervenes_in]: Mass Spectrometry [id:0000066]
subclass of: obo vocabulary:Entity

Composite [id:0000154]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000154
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Composite
type: Class
description: Materials made from two or more constituent materials with significantly different physical or chemical properties, that when combined, produce a material with characteristics different from the individual components. The individual components remain separate and distinct within the finished structure. []
subclass of: Biomaterial [id:0000035]

Fibroblast [id:0000155]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000155
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Fibroblast
type: Class
obo vocabulary:namespace: cl
description: A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. [CL:0000057]
subclass of: Cell [id:0000003]

Primer [id:0000156]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000156
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Primer
type: Class
obo vocabulary:namespace: ero
description: Nucleic acid reagent that is a short strand of nucleic acid that serves as a starting point for DNA or RNA synthesis. [ERO:0000631]
intervenes_in [obo_vocabulary:intervenes_in]: Real-time polymerase chain reaction [id:0000063]
subclass of: obo vocabulary:Entity

Quantification file [id:0000157]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000157
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Quantification file
type: Class
description: Quantification can be relative or absolute. Relative quantification is based on internal reference genes to determine fold-differences in expression of the target gene. Absolute quantification gives the exact number of target DNA molecules by comparison with DNA standards. Examples of genes examined with this technique are COL1A1, COL2A1. []
derives_from [obo_vocabulary:derives_from]: Real-time polymerase chain reaction [id:0000063]
subclass of: obo vocabulary:Entity

DNA-polymerase [id:0000158]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000158
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: DNA-polymerase
type: Class
obo vocabulary:namespace: nci_thesaurus
description: Nucleotidyltransferases that catalyze the addition of deoxyribonucleotide residues to the end of a DNA. [Thesaurus:DNA_Polymerase]
intervenes_in [obo_vocabulary:intervenes_in]: Real-time polymerase chain reaction [id:0000063]
subclass of: obo vocabulary:Entity

Immunoblotting [id:0000159]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000159
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Immunoblotting
type: Class
obo vocabulary:namespace: msh
description: Immunologic method used for detecting or quantifying immunoreactive substances. The substance is identified by first immobilizing it by blotting onto a membrane and then tagging it with labeled antibodies. [MSH:D015151]
subclass of: Biomolecular analysis [id:0000054]

Electrophoresis gel [id:0000160]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000160
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Electrophoresis gel
type: Class
obo vocabulary:namespace: nci_thesaurus
description: A gel matrix through which molecules are separated, usually by size or charge, under the influence of an electrical field. [Thesaurus:Electrophoresis_Gel]
intervenes_in [obo_vocabulary:intervenes_in]: Immunoblotting [id:0000159]
subclass of: obo vocabulary:Entity

Western blot [id:0000161]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000161
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Western blot
type: Class
obo vocabulary:namespace: mi
description: Procedure to identify and quantify proteins. A mixture of protein is first submitted to an electrophoresis in denaturing condition and then electro-transferred from the gel to a membrane. The membrane is then incubated with a primary antibody specific for a given protein or a specific residue modification in the sample under analysis. A secondary antibody, radiolabelled or fused to fluorophore or to a chromogenic enzyme, targets the first antibody and allows the visualisation of the protein band on the membrane. [MI:0113]
subclass of: Immunoblotting [id:0000159]

Northern blot [id:0000162]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000162
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Northern blot
type: Class
obo vocabulary:namespace: mmo
description: A multistep process in which a mixture of RNA is separated by gel electrophoresis, that is, separation of ionic solutes based on differences in rate of migration in an applied electric field using a semisolid colloid such as agarose or acrylamide as the support medium, followed by transfer to a membrane such as nitrocellulose or nylon and detection of specific RNAs by hybridization of a tagged or labelled polynucleotide, usually a single DNA fragment with a specific, known sequence. [MMO:0000339]
subclass of: Immunoblotting [id:0000159]

Southern blot [id:0000163]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000163
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Southern blot
type: Class
obo vocabulary:namespace: mi
description: A standard procedure to identify DNA fragments containing specific gene sequences. In this procedure i) a genome is fragmented using a restriction enzyme ii) the generated fragments are separated by electrophoresis iii) the fragments are transferred to a membrane iv)the membrane is incubated with a radio labelled probe that hybridises any complementary subsequence. [MI:0103]
subclass of: Immunoblotting [id:0000159]

Agarose gel image [id:0000164]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000164
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Agarose gel image
type: Class
description: Image of the matrix gel containing the separated target molecules (proteins or nucleic acids). []
derives_from [obo_vocabulary:derives_from]: Immunoblotting [id:0000159]
subclass of: obo vocabulary:Entity

Staining protocol [id:0000165]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000165
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Staining protocol
type: Class
obo vocabulary:namespace: pdq
description: Any of the various methods that use a dye, reagent, or other material for producing coloration in tissues or microorganisms for microscopic examination. [PDQ:CDR0000575401]
intervenes_in [obo_vocabulary:intervenes_in]: Histochemical staining [id:0000068]
subclass of: obo vocabulary:Entity

Immunohistofluorescence stained tissue [id:0000166]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000166
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Immunohistofluorescence stained tissue
type: Class
description: Tissues that, under exposure to ultraviolet rays, produce fluorescence. Examples of proteins examined with this technique are BSP, Col I, Col II. []
derives_from [obo_vocabulary:derives_from]: Immunohistofluorescence [id:0000067]
subclass of: obo vocabulary:Entity

AFM image [id:0000168]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000168
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: AFM image
type: Class
description: High-resolution image acquired from AFM technology. It shows a combination of surface (topological information about the roughness and the features of the surface is derived) and mechanical information, by means of the cantilever which measures the elasticity of the tested sample. []
derives_from [obo_vocabulary:derives_from]: Atomic Force Microscopy [id:0000060]
subclass of: obo vocabulary:Entity

Fracture maximum load [id:0000170]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000170
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Fracture maximum load
type: Class
description: The stress applied to fracture a specimen. []
obo vocabulary:related synonym: Breaking strength
obo vocabulary:related synonym: Fracture strength
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]

Fracture maximum strain [id:0000171]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000171
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Fracture maximum strain
type: Class
description: The strain applied to fracture a specimen. []
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]

Torsion modulus [id:0000172]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000172
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Torsion modulus
type: Class
description: Measure of the amount of torque that a radial shaft can sustain during its rotation in a mechanical system. []
obo vocabulary:related synonym: Torsional stiffness
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Torsion test [id:0000140]

Maximum load [id:0000173]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000173
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Maximum load
type: Class
description: Maximum stress that a material can withstand while being stretched or pulled before failing or breaking. []
obo vocabulary:related synonym: Tensile strength
obo vocabulary:related synonym: Ultimate strength
obo vocabulary:related synonym: Ultimate tensile strength
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Tensile test [id:0000138]

Maximum strain [id:0000174]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000174
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Maximum strain
type: Class
description: Maximum strain that a material can withstand while being stretched or pulled before failing or breaking. []
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Tensile test [id:0000138]

Other composite [id:0000187]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000187
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Other composite
type: Class
description: Composite material not listed among the composite materials. []
subclass of: Composite [id:0000154]

Mechanical parameter of load [id:0000191]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000191
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Mechanical parameter of load
type: Class
description: Dataset of physical parameters about mechanical tests performed, such as the applied intensity and velocity of strain. []
intervenes_in [obo_vocabulary:intervenes_in]: Dynamic Mechanical Analysis [id:0000061]
subclass of: obo vocabulary:Entity

SEM image [id:0000192]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000192
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: SEM image
type: Class
description: High-resolution image acquired from SEM technique. Morphological information about sample surface and three-dimensional structure is derived. []
derives_from [obo_vocabulary:derives_from]: Scanning electron microscopy [id:0000070]
subclass of: obo vocabulary:Entity

TEM image [id:0000193]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000193
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: TEM image
type: Class
description: High-resolution image of TEM acquisition. The image is formed from the interaction of the electrons transmitted through the specimen; it enables to examine fine details, even as small as a single column of atoms. []
derives_from [obo_vocabulary:derives_from]: Transmission electron microscopy [id:0000064]
subclass of: obo vocabulary:Entity

X ray image [id:0000194]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000194
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: X ray image
type: Class
description: High-resolution 2D image from X-ray technology. Since X-rays interact with matter, it's possible to highlight specific physical entities (i.e. tissues, organs), having different X-ray adsorption properties, due to their chemico-physical nature. []
derives_from [obo_vocabulary:derives_from]: X-ray microtomography [id:0000062]
subclass of: obo vocabulary:Entity

Excitation wavelength [id:0000195]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000195
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Excitation wavelength
type: Class
description: Wavelength of the radiation (usually coming from a laser line) used to stimulate fluorescence in the measured object. The stimulated dye will emit radiation with a particular Emission Wavelength. []
intervenes_in [obo_vocabulary:intervenes_in]: Immunohistofluorescence [id:0000067]
subclass of: obo vocabulary:Entity

Thermoplasticity [id:0000196]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000196
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Thermoplasticity
type: Class
description: Material property consisting in becoming soft when heated and hard when cooled. []
subclass of: Physical property [id:0000037]
characterizes [obo_vocabulary:characterizes]: Ultra high molecular weight polyethylene [id:0000092]
characterizes [obo_vocabulary:characterizes]: Polylactic acid [id:0000097]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone [id:0000167]
characterizes [obo_vocabulary:characterizes]: Polyethylene glycol [id:0000176]
characterizes [obo_vocabulary:characterizes]: Polyglycolic acid [id:0000188]
characterizes [obo_vocabulary:characterizes]: Polylactic-co-glycolic acid [id:0000190]
characterizes [obo_vocabulary:characterizes]: Poly-L-lactide [id:0000200]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-hydroxyapatite-collagen [id:0000213]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-tricalcium phosphate [id:0000214]
characterizes [obo_vocabulary:characterizes]: SPCL-Si [id:0000215]
characterizes [obo_vocabulary:characterizes]: Collagen-polylactic-co-glycolic acid [id:0000216]
characterizes [obo_vocabulary:characterizes]: Polycaprolactone-polylactic-co-glycolic acid [id:0000217]
characterizes [obo_vocabulary:characterizes]: Baghdadite-polycaprolactone-glass nanoparticle [id:0000219]

Flexural strength [id:0000197]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000197
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Flexural strength
type: Class
description: Mechanical parameter for brittle material, defined as a material's ability to resist deformation under load. []
obo vocabulary:related synonym: Bend strength
obo vocabulary:related synonym: Fracture strength
obo vocabulary:related synonym: Modulus of rupture
subclass of: Mechanical property [id:0000004]
derives_from [obo_vocabulary:derives_from]: Fracture test [id:0000139]

SEM protocol [id:0000198]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000198
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: SEM protocol
type: Class
description: It first aims at fixing samples, then at dehydrating them, through a ethanols scale, and finally at coating samples with gold/palladium alloy. []
intervenes_in [obo_vocabulary:intervenes_in]: Scanning electron microscopy [id:0000070]
subclass of: obo vocabulary:Entity

TEM protocol [id:0000199]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000199
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: TEM protocol
type: Class
description: It aims at fixing samples, dehydrating and including them into resin (infiltration and embedding). []
intervenes_in [obo_vocabulary:intervenes_in]: Transmission electron microscopy [id:0000064]
subclass of: obo vocabulary:Entity

Real-time reverse-transcription polymerase chain reaction [id:0000201]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000201
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Real-time reverse-transcription polymerase chain reaction
type: Class
obo vocabulary:namespace: obi
description: It is a PCR real time preceded by a reverse transcription step (reverse transcription step = an RNA strand is reverse transcribed into its DNA complement using the enzyme reverse transcriptase) [OBI:0000911]
obo vocabulary:related synonym: qRT-PCR
subclass of: Real-time polymerase chain reaction [id:0000063]

Extracellular matrix [id:0000202]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000202
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Extracellular matrix
type: Class
obo vocabulary:namespace: nci_thesaurus
description: Network of fibers that hold cells together. It is found within the extracellular space and in association with the basement membrane of the cell surface. It promotes cellular proliferation and provides a supporting structure to which cells or cell lysates in culture dishes adhere. It is broken down during normal physiological and disease processes such as bone remodeling, embryogenesis, cancer, and arthritis. [NCIThesaurus:C13232]
derives_from [obo_vocabulary:derives_from]: Cell seeding [id:0000000]
intervenes_in [obo_vocabulary:intervenes_in]: Cellular response evaluation [id:0000033]
subclass of: obo vocabulary:Entity

Growth factor [id:0000203]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000203
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Growth factor
type: Class
obo vocabulary:namespace: nci_thesaurus
description: Extracellular signaling molecule involved in control of target cell proliferation, cell survival, and cell differentiation. [NCIThesaurus:C20424]
characterizes [obo_vocabulary:characterizes]: Growth environment [id:0000101]
subclass of: obo vocabulary:Entity

Growth factor concentration [id:0000204]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000204
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Growth factor concentration
type: Class
description: Measurable characteristic related to the concentration of growth factors. []
characterizes [obo_vocabulary:characterizes]: Growth environment [id:0000101]
subclass of: obo vocabulary:Entity

Growth factor species [id:0000205]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000205
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Growth factor species
type: Class
description: It defines the organism species the growth factor comes from. []
characterizes [obo_vocabulary:characterizes]: Growth environment [id:0000101]
subclass of: obo vocabulary:Entity

Growth factor isoform [id:0000206]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000206
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Growth factor isoform
type: Class
description: It defines the specific isoform of the growth factor. []
characterizes [obo_vocabulary:characterizes]: Growth environment [id:0000101]
subclass of: obo vocabulary:Entity

Sus scrofa domesticus [id:0000207]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000207
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Sus scrofa domesticus
type: Class
obo vocabulary:namespace: ncbi_taxonomy
obo vocabulary:x-ncbitaxon: taxonomy:9825
subclass of: Donor [id:0000082]
subclass of: Host [id:0000083]

taxonomy:9825
bio2rdf vocabulary:namespace: taxonomy
bio2rdf vocabulary:identifier: 9825
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/taxonomy/9825
type: taxonomy vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Adipose-derived stem cell [id:0000208]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000208
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Adipose-derived stem cell
type: Class
obo vocabulary:namespace: bto
description: Most adult stem cells are lineage-restricted (multipotent) and are generally referred to by their tissue origin e.g. adipose-derived stem cell. [BTO:0005198]
obo vocabulary:related synonym: ADSC
subclass of: Cell [id:0000003]

Embryonic stem cell [id:0000209]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000209
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Embryonic stem cell
type: Class
obo vocabulary:namespace: nci_thesaurus
description: Embryonic stem (ES) cells are cells derived from the inner cell mass of the early embryo that can be propagated indefinitely in the primitive undifferentiated state while remaining pluripotent. [NCIThesaurus:C12935]
obo vocabulary:related synonym: ESC
subclass of: Cell [id:0000003]

Periodontal ligament cell [id:0000220]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000220
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Periodontal ligament cell
type: Class
description: Fibroblast-like cells characterized by collagen production but also possessing some osteoblastic features. []
obo vocabulary:comment: From: Jonsson D et al. The human periodontal ligament cell: a fibroblast-like cell acting as an immune cell. J Periodontal Res. 2011, 46(2):153-7.
subclass of: Cell [id:0000003]

Functionalization [id:0000221]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000221
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Functionalization
type: Class
description: Functionalization is employed for surface modification of industrial materials in order to achieve desired surface properties. It consists in modifying the surface of a material by bringing physical, chemical or biological characteristics different from the ones originally found on the surface of a material. The modification can be done by different methods with a view to altering a wide range of characteristics of the surface, such as: roughness, hydrophilicity, surface charge, surface energy, biocompatibility and reactivity. Coating of materials is a type of functionalization. []
subclass of: Scaffold property [id:0000002]
characterizes [obo_vocabulary:characterizes]: Baghdadite-polycaprolactone-glass nanoparticle [id:0000219]

Bone-derived cell [id:0000226]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000226
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bone-derived cell
type: Class
description: Cell derived from bone. []
obo vocabulary:related synonym: BDC
subclass of: Cell [id:0000003]

Umbilical cord mesenchymal stem cell [id:0000227]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000227
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Umbilical cord mesenchymal stem cell
type: Class
obo vocabulary:namespace: pdq
description: Multipotent stem cells of mesenchymal origin isolated from umbilical cord blood. Umbilical cord blood-derived mesenchymal stem cells can differentiate into a variety of cell types including fibroblasts, osteoblasts, chondrocytes, myocytes, adipocytes, and endothelial cells. [PDQ:CDR0000633689]
obo vocabulary:related synonym: UCMSC
obo vocabulary:related synonym: umbilical cord blood-derived mesenchymal stem cells
subclass of: Cell [id:0000003]

MC3T3-E1 cell line [id:0000228]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000228
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: MC3T3-E1 cell line
type: Class
obo vocabulary:namespace: bto
description: Mouse embryo/fetus calvaria fibroblasts; established from the calvaria of an embryo/fetus C57BL/6 mouse; described to differentiate to osteoblasts and to produce collagen. [BTO:0001957]
subclass of: Osteoblast [id:0000073]

Pore interconnection [id:0000229]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000229
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Pore interconnection
type: Class
description: Level of connection between pores. It improves mass transport throughout the material. []
obo vocabulary:related synonym: Interpore connectivity
characterizes [obo_vocabulary:characterizes]: Porosity [id:0000017]
subclass of: obo vocabulary:Entity

Chemical functionalization [id:0000230]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000230
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Chemical functionalization
type: Class
description: Addition of functional groups/peptides/proteins/molecules/growth factors onto the surface of a material by chemical synthesis methods. Chemical functionalization is one of the main methods to obtain the desired physical and chemical properties of materials, such as hydrophilicity or bioactivation. []
subclass of: Functionalization [id:0000221]

Physical functionalization [id:0000231]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000231
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Physical functionalization
type: Class
description: Alteration of the the surface topography of a material, producing microscale and nanoscale features in a well-controlled manner with nanocoating, film deposition, or in situ surface modifications at nanoscale level, with the aim to improve the material performances. []
subclass of: Functionalization [id:0000221]

Extraction protocol [id:0000232]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000232
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Extraction protocol
type: Class
obo vocabulary:namespace: efo
description: The procedure used to obtain something from a mixture or compound by chemical or physical or mechanical means. [EFO:0000490]
characterizes [obo_vocabulary:characterizes]: Primary cell culture [id:0000008]
subclass of: obo vocabulary:Entity

Health status [id:0000233]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000233
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Health status
type: Class
obo vocabulary:namespace: exo
description: The condition of an organism in all aspects (e.g., functional or metabolic efficiency). [ExO:0000038]
characterizes [obo_vocabulary:characterizes]: Donor [id:0000082]
characterizes [obo_vocabulary:characterizes]: Host [id:0000083]
subclass of: obo vocabulary:Entity

Seeding efficiency [id:0000234]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000234
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Seeding efficiency
type: Class
description: The percentage of cells plated (seeded, inoculated) which attach to the surface of the culture vessel within a specified period of time. The conditions under which such a determination is made should always be stated. []
obo vocabulary:comment: From: Worthington Tissue Dissociation Guide, http://www.worthington-biochem.com/tissuedissociation/glossary.html#attachment
obo vocabulary:related synonym: Attachment efficiency
characterizes [obo_vocabulary:characterizes]: Cell seeding [id:0000000]
subclass of: obo vocabulary:Entity

Cytotoxicity text [id:0000235]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000235
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cytotoxicity text
type: Class
description: It determines whether a product or compound will have any toxic effect due to leachables on living cells. Generally used as a screening tool for raw materials or component products before they are put into the design of a medical device. []
subclass of: Cellular response evaluation [id:0000033]

Flow Cytometry [id:0000236]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000236
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Flow Cytometry
type: Class
obo vocabulary:namespace: msh
description: Technique using an instrument system for making, processing, and displaying one or more measurements on individual cells obtained from a cell suspension. Cells are usually stained with one or more fluorescent dyes specific to cell components of interest, e.g., DNA, and fluorescence of each cell is measured as it rapidly transverses the excitation beam (laser or mercury arc lamp). Fluorescence provides a quantitative measure of various biochemical and biophysical properties of the cell, as well as a basis for cell sorting. Other measurable optical parameters include light absorption and light scattering, the latter being applicable to the measurement of cell size, shape, density, granularity, and stain uptake. [MeSH:D005434]
obo vocabulary:related synonym: FACS
obo vocabulary:related synonym: Fluorescence-Activated Cell Sorting
intervenes_in [obo_vocabulary:intervenes_in]: Cell characterization [id:0000243]
subclass of: obo vocabulary:Entity

Cell characterization [id:0000243]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000243
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cell characterization
type: Class
description: Procedure addressed to ensure the quality of the cells. It assesses the cell source with regard to its identity/phenotype, to the presence of other cells types, adventitious agents, endogenous agents,and molecular contaminants. []
subclass of: In vitro study [id:0000023]

NIH/3T3 cell line [id:0000237]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000237
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: NIH/3T3 cell line
type: Class
subclass of: Fibroblast [id:0000155]

Trabecular bone cell [id:0000238]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000238
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Trabecular bone cell
type: Class
description: Cell derived from trabecular (or cancellous, or spongy) bone. []
subclass of: Cell [id:0000003]

Cortical bone cell [id:0000239]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000239
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cortical bone cell
type: Class
description: Cell derived from cortical bone. []
subclass of: Cell [id:0000003]

Bone marrow stromal cell [id:0000240]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000240
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bone marrow stromal cell
type: Class
description: Primary human marrow stromal cells (MSCs) cultured from adult bone marrow (BM) mononuclear cells (MNCs). []
obo vocabulary:related synonym: BMSC
x bto [obo_vocabulary:x-bto]: bto:0004122
subclass of: Cell [id:0000003]

bto:0004122
bio2rdf vocabulary:namespace: bto
bio2rdf vocabulary:identifier: 0004122
bio2rdf vocabulary:x-identifiers.org: http://identifiers.org/bto/0004122
type: bto resource [bto_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3

Dental pulp stem cell [id:0000241]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000241
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Dental pulp stem cell
type: Class
description: Multipotent stem cells obtained from dental pulp. []
obo vocabulary:related synonym: DPSC
subclass of: Cell [id:0000003]

Bone marrow stromal stem cell [id:0000242]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000242
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bone marrow stromal stem cell
type: Class
description: They are known to be able to transform into liver, nerve, muscle and kidney cells. [BTO:0002668]
subclass of: Cell [id:0000003]

MG63 cell line [id:0000244]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000244
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: MG63 cell line
type: Class
description: Homo sapiens (human) bone, osteosarcoma cell line; established from a 14 year old caucasian male. [BTO:0001596]
subclass of: Osteosarcoma cell [id:0000248]

Osteosarcoma cell [id:0000248]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000248
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Osteosarcoma cell
type: Class
description: Cell of a malignant neoplasm of the bone-forming tissues. []
subclass of: Cell [id:0000003]

Bioerosion [id:0000246]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000246
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bioerosion
type: Class
description: Process that induces a non-hydrosoluble polymer to become hydrosoluble in physiological conditions. []
subclass of: Biomaterial behaviour [id:0000251]

Biomaterial behaviour [id:0000251]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000251
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Biomaterial behaviour
type: Class
description: The set of behaviors that characterize a material on its chemical-physical nature. []
characterizes [obo_vocabulary:characterizes]: In vitro study [id:0000023]
characterizes [obo_vocabulary:characterizes]: In vivo study [id:0000027]
subclass of: obo vocabulary:Entity

Cytotoxicity by elution test [id:0000249]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000249
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Cytotoxicity by elution test
type: Class
description: Material is put in the culture medium for a predefined period of time. Later cells are cultured in that medium and observed under microscope to identify possible toxic effects. []
subclass of: Cytotoxicity text [id:0000235]

Direct cytotoxicity test [id:0000250]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000250
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Direct cytotoxicity test
type: Class
description: Cells are seeded onto the material and observed under microscope to identify possible toxic effects. []
subclass of: Cytotoxicity text [id:0000235]

Degradation [id:0000252]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000252
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Degradation
type: Class
obo vocabulary:namespace: nci_thesaurus
description: The reduction of a chemical compound to one less complex, as by splitting off one or more groups. [Thesaurus:C61559]
subclass of: Biomaterial behaviour [id:0000251]

Bioreabsorption [id:0000253]
bio2rdf vocabulary:namespace: id
bio2rdf vocabulary:identifier: 0000253
type: id resource [id_vocabulary:Resource]
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: Bioreabsorption
type: Class
description: Process of removal of a polymer or its degradation products through the cellular activity (phagocytosis). []
subclass of: Biomaterial behaviour [id:0000251]

characterizes [obo:characterizes]
bio2rdf vocabulary:namespace: obo
bio2rdf vocabulary:identifier: characterizes
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: characterizes
type: Class

intervenes_in [obo:intervenes_in]
bio2rdf vocabulary:namespace: obo
bio2rdf vocabulary:identifier: intervenes_in
type: obo vocabulary:Resource
in dataset: bioportal resource:bio2rdf.dataset.bioportal.R3
title: intervenes_in
type: Class